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James Cavalcoli
James Cavalcoli
University of Michigan Department of Computational Medicine and Bioinformatics
Verified email at umich.edu
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Cited by
Cited by
Year
Decade-long bacterial community dynamics in cystic fibrosis airways
J Zhao, PD Schloss, LM Kalikin, LA Carmody, BK Foster, JF Petrosino, ...
Proceedings of the National Academy of Sciences 109 (15), 5809-5814, 2012
6792012
Candidate exome capture identifies mutation of SDCCAG8 as the cause of a retinal-renal ciliopathy
EA Otto, TW Hurd, R Airik, M Chaki, W Zhou, C Stoetzel, SB Patil, S Levy, ...
Nature genetics 42 (10), 840-850, 2010
3792010
Positional cloning of the combined hyperlipidemia gene Hyplip1
JS Bodnar, A Chatterjee, LW Castellani, DA Ross, J Ohmen, J Cavalcoli, ...
Nature genetics 30 (1), 110-116, 2002
2512002
Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks
J Gao, VG Tarcea, A Karnovsky, BR Mirel, TE Weymouth, CW Beecher, ...
Bioinformatics 26 (7), 971-973, 2010
2182010
Genotype-based screen for ENU-induced mutations in mouse embryonic stem cells
Y Chen, D Yee, K Dains, A Chatterjee, J Cavalcoli, E Schneider, J Om, ...
Nature genetics 24 (3), 314-317, 2000
1872000
Identification of cross-species shared transcriptional networks of diabetic nephropathy in human and mouse glomeruli
JB Hodgin, V Nair, H Zhang, A Randolph, RC Harris, RG Nelson, EJ Weil, ...
Diabetes 62 (1), 299-308, 2013
1732013
Genome-wide identification of Klebsiella pneumoniae fitness genes during lung infection
MA Bachman, P Breen, V Deornellas, Q Mu, L Zhao, W Wu, JD Cavalcoli, ...
MBio 6 (3), 10.1128/mbio. 00775-15, 2015
1712015
ConceptGen: a gene set enrichment and gene set relation mapping tool
MA Sartor, V Mahavisno, VG Keshamouni, J Cavalcoli, Z Wright, ...
Bioinformatics 26 (4), 456-463, 2010
1682010
The IRE1α/XBP1s pathway is essential for the glucose response and protection of β cells
JR Hassler, DL Scheuner, S Wang, J Han, VK Kodali, P Li, J Nguyen, ...
PLoS biology 13 (10), e1002277, 2015
1542015
Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling
BJ Baker, CS Sheik, CA Taylor, S Jain, A Bhasi, JD Cavalcoli, GJ Dick
The ISME journal 7 (10), 1962-1973, 2013
1452013
Genome-Based Characterization of Two Prenylation Steps in the Assembly of the Stephacidin and Notoamide Anticancer Agents in a Marine-Derived Aspergillus sp.
Y Ding, JR Wet, J Cavalcoli, S Li, TJ Greshock, KA Miller, JM Finefield, ...
Journal of the American Chemical Society 132 (36), 12733-12740, 2010
1442010
Herpes simplex virus type 1 vector-mediated expression of nerve growth factor protects dorsal root ganglion neurons from peroxide toxicity
WF Goins, KA Lee, JD Cavalcoli, ME O’Malley, ST DeKosky, DJ Fink, ...
Journal of virology 73 (1), 519-532, 1999
1231999
Anxiety is associated with diminished exercise performance and quality of life in severe emphysema: a cross-sectional study
ND Giardino, JL Curtis, AC Andrei, VS Fan, JO Benditt, M Lyubkin, ...
Respiratory research 11, 1-11, 2010
1202010
Genome-tagged mice (GTM): two sets of genome-wide congenic strains
OA Iakoubova, CL Olsson, KM Dains, DA Ross, A Andalibi, K Lau, J Choi, ...
Genomics 74 (1), 89-104, 2001
922001
Virtual 2-D Gel Electrophoresis: Visualization and Analysis of the E. c oli Proteome by Mass Spectrometry
RR Ogorzalek Loo, JD Cavalcoli, RA VanBogelen, C Mitchell, JA Loo, ...
Analytical chemistry 73 (17), 4063-4070, 2001
892001
Current status and future perspectives for sequencing livestock genomes
Y Bai, M Sartor, J Cavalcoli
Journal of animal science and biotechnology 3, 1-6, 2012
692012
Regulation of the human endogenous retrovirus K (HML-2) transcriptome by the HIV-1 Tat protein
MJ Gonzalez-Hernandez, JD Cavalcoli, MA Sartor, R Contreras-Galindo, ...
Journal of virology 88 (16), 8924-8935, 2014
682014
Complete genome sequence of Klebsiella pneumoniae strain ATCC 43816 KPPR1, a rifampin-resistant mutant commonly used in animal, genetic, and molecular biology studies
CA Broberg, W Wu, JD Cavalcoli, VL Miller, MA Bachman
Genome announcements 2 (5), 10.1128/genomea. 00924-14, 2014
602014
Alternative splicing of human NT5E in cirrhosis and hepatocellular carcinoma produces a negative regulator of ecto-5′-nucleotidase (CD73)
NT Snider, PJ Altshuler, S Wan, TH Welling, J Cavalcoli, MB Omary
Molecular Biology of the Cell 25 (25), 4024-4033, 2014
542014
Ecological and genetic interactions between cyanobacteria and viruses in a low‐oxygen mat community inferred through metagenomics and metatranscriptomics
AA Voorhies, SD Eisenlord, DN Marcus, MB Duhaime, BA Biddanda, ...
Environmental Microbiology 18 (2), 358-371, 2016
452016
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