Ignacio Arganda-Carreras

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Johannes SchindelinVerified email at wisc.edu
Tobias PietzschCSBD/MPI-CBGVerified email at mpi-cbg.de
Albert CardonaMRC LMB and University of CambridgeVerified email at mrc-lmb.cam.ac.uk
Stephan PreibischHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Curtis RuedenUniversity of Wisconsin-MadisonVerified email at wisc.edu
Mark Longair(Previously) Postdoctoral researcher, Institute of Neuroinformatics, Uni / ETH ZürichVerified email at longair.net
Pavel TomancakResearch Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in DresdenVerified email at mpi-cbg.de
Benjamin SchmidOptical Imaging Centre ErlangenVerified email at fau.de
Kevin EliceiriRRF Walter H. Helmerich Professor Medical Physics, Biomedical Engineering, UW-MadisonVerified email at wisc.edu
Jean-Yves TinevezInstitut Pasteur, Paris, FranceVerified email at pasteur.fr
Daniel James Whitemetrology engineer at infineonVerified email at infineon.com
Fadi DornaikaIKERBASQUE Research FoundationVerified email at ehu.eus
H Sebastian SeungProfessor, Princeton Neuroscience Institute and Computer Science Dept.Verified email at princeton.edu
Arrate Muñoz BarrutiaProfessor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio MarañónVerified email at ing.uc3m.es
Carlos Ortiz de SolorzanoFull Professor - CIMA - Universidad de NavarraVerified email at unav.es
Philippe AndreyResearch Director (DR2), Institut National de la Recherche Agronomique (INRA)Verified email at inrae.fr
Daniel Franco-BarrancoPostdoc at MRC Laboratory of Molecular Biology (LMB) & Donostia International Physics Center (DIPC)Verified email at dipc.org
David LeglandINRAEVerified email at inrae.fr
Carlos Oscar S. Sorzano (ORCID:000...National Center of Biotechnology (CSIC)Verified email at cnb.csic.es

Ignacio Arganda-Carreras

Ikerbasque Associate Researcher at University of the Basque Country, Biofisika Institute and DIPC

Verified email at ehu.eus - Homepage

Machine Learning Image Processing Computer Vision Bioimage Analysis Neuroscience


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Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature Methods 9 (7), 676–682, 2012	60273	2012
BoneJ: free and extensible bone image analysis in ImageJ M Doube, MM Kłosowski, I Arganda-Carreras, FP Cordelières, ... Bone 47 (6), 1076-1079, 2010	2215	2010
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017	2174	2017
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ D Legland, I Arganda-Carreras, P Andrey Bioinformatics 32 (22), 3532-3534, 2016	1214	2016
TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PloS one 7 (6), e38011, 2012	1001	2012
Serial two-photon tomography for automated ex vivo mouse brain imaging T Ragan, LR Kadiri, KU Venkataraju, K Bahlmann, J Sutin, J Taranda, ... Nature methods 9 (3), 255-258, 2012	693	2012
3D reconstruction of histological sections: Application to mammary gland tissue I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ... Microscopy research and technique 73 (11), 1019-1029, 2010	693	2010
Consistent and elastic registration of histological sections using vector-spline regularization I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ... Computer Vision Approaches to Medical Image Analysis: Second International …, 2006	450	2006
Crowdsourcing the creation of image segmentation algorithms for connectomics I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ... Frontiers in neuroanatomy 9, 152591, 2015	383	2015
Mapping social behavior-induced brain activation at cellular resolution in the mouse Y Kim, KU Venkataraju, K Pradhan, C Mende, J Taranda, SC Turaga, ... Cell reports 10 (2), 292-305, 2015	331	2015
Vision-Based Fall Detection with Convolutional Neural Networks A Núñez-Marcos, G Azkune, I Arganda-Carreras Wireless Communications and Mobile Computing 2017, 1-16, 2017	301	2017
Deep learning on chest X-ray images to detect and evaluate pneumonia cases at the era of COVID-19 K Hammoudi, H Benhabiles, M Melkemi, F Dornaika, I Arganda-Carreras, ... Journal of medical systems 45 (7), 75, 2021	221	2021
ANHIR: automatic non-rigid histological image registration challenge J Borovec, J Kybic, I Arganda-Carreras, DV Sorokin, G Bueno, ... IEEE transactions on medical imaging 39 (10), 3042-3052, 2020	140	2020
MitoEM dataset: Large-scale 3D mitochondria instance segmentation from EM images D Wei, Z Lin, D Franco-Barranco, N Wendt, X Liu, W Yin, X Huang, ... International Conference on Medical Image Computing and Computer-Assisted …, 2020	107	2020
Avoiding a replication crisis in deep-learning-based bioimage analysis RF Laine, I Arganda-Carreras, R Henriques, G Jacquemet Nature methods 18 (10), 1136-1144, 2021	95	2021
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy L Abdeladim, KS Matho, S Clavreul, P Mahou, JM Sintes, X Solinas, ... Nature communications 10 (1), 1662, 2019	94	2019
An optimized approach to perform bone histomorphometry D Malhan, M Muelke, S Rosch, AB Schaefer, F Merboth, D Weisweiler, ... Frontiers in endocrinology 9, 666, 2018	89	2018
Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling N Miyasaka, I Arganda-Carreras, N Wakisaka, M Masuda, U Sümbül, ... Nature communications 5 (1), 3639, 2014	82	2014
Efficient and compact face descriptor for driver drowsiness detection A Moujahid, F Dornaika, I Arganda-Carreras, J Reta Expert Systems with Applications 168, 114334, 2021	77	2021
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts A Cardona, S Saalfeld, I Arganda-Carreras, W Pereanu, J Schindelin, ... The Journal of Neuroscience 30 (22), 7538-7553, 2010	70	2010

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