Karina Yusim
Karina Yusim
Los Alamos National Laboratory, New Mexico Consortium
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Cited by
Cited by
Diversity considerations in HIV-1 vaccine selection
B Gaschen, J Taylor, K Yusim, B Foley, F Gao, D Lang, V Novitsky, ...
Science 296 (5577), 2354-2360, 2002
Evolutionary and immunological implications of contemporary HIV-1 variation
B Korber, B Gaschen, K Yusim, R Thakallapally, C Kesmir, V Detours
British medical bulletin 58 (1), 19-42, 2001
Polyvalent vaccines for optimal coverage of potential T-cell epitopes in global HIV-1 variants
W Fischer, S Perkins, J Theiler, T Bhattacharya, K Yusim, R Funkhouser, ...
Nature medicine 13 (1), 100-106, 2007
The Los Alamos hepatitis C sequence database
C Kuiken, K Yusim, L Boykin, R Richardson
Bioinformatics 21 (3), 379-384, 2005
Consistent cytotoxic-T-lymphocyte targeting of immunodominant regions in human immunodeficiency virus across multiple ethnicities
N Frahm, BT Korber, CM Adams, JJ Szinger, R Draenert, MM Addo, ...
Journal of virology 78 (5), 2187-2200, 2004
Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation
K Yusim, C Kesmir, B Gaschen, MM Addo, M Altfeld, S Brunak, A Chigaev, ...
Journal of virology 76 (17), 8757-8768, 2002
Founder effects in the assessment of HIV polymorphisms and HLA allele associations
T Bhattacharya, M Daniels, D Heckerman, B Foley, N Frahm, C Kadie, ...
science 315 (5818), 1583-1586, 2007
Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA
A Leslie, D Kavanagh, I Honeyborne, K Pfafferott, C Edwards, T Pillay, ...
The Journal of experimental medicine 201 (6), 891-902, 2005
Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients
PA Goepfert, W Lumm, P Farmer, P Matthews, A Prendergast, JM Carlson, ...
The Journal of experimental medicine 205 (5), 1009-1017, 2008
Immunoinformatics comes of age
B Korber, M LaBute, K Yusim
PLoS Computational Biology 2 (6), e71, 2006
Impact of HLA-B alleles, epitope binding affinity, functional avidity, and viral coinfection on the immunodominance of virus-specific CTL responses
F Bihl, N Frahm, L Di Giammarino, J Sidney, M John, K Yusim, ...
The Journal of Immunology 176 (7), 4094-4101, 2006
Evidence for human leukocyte antigen heterozygote advantage against hepatitis C virus infection
P Hraber, C Kuiken, K Yusim
Hepatology 46 (6), 1713-1721, 2007
Extensive HLA class I allele promiscuity among viral CTL epitopes
N Frahm, K Yusim, TJ Suscovich, S Adams, J Sidney, P Hraber, HS Hewitt, ...
European journal of immunology 37 (9), 2419-2433, 2007
A comprehensive system for consistent numbering of HCV sequences, proteins and epitopes
C Kuiken, C Combet, J Bukh, T Shin, G Deleage, M Mizokami, ...
Hepatology 44 (5), 1355-1361, 2006
Role of maternal autologous neutralizing antibody in selective perinatal transmission of human immunodeficiency virus type 1 escape variants
R Dickover, E Garratty, K Yusim, C Miller, B Korber, Y Bryson
Journal of virology 80 (13), 6525-6533, 2006
CATNAP: a tool to compile, analyze and tally neutralizing antibody panels
H Yoon, J Macke, AP West Jr, B Foley, PJ Bjorkman, B Korber, K Yusim
Nucleic acids research 43 (W1), W213-W219, 2015
Mycobacterium tuberculosis–heterogeneity revealed through whole genome sequencing
C Ford, K Yusim, T Ioerger, S Feng, M Chase, M Greene, B Korber, ...
Tuberculosis 92 (3), 194-201, 2012
HIV-1 neutralizing antibody signatures and application to epitope-targeted vaccine design
CA Bricault, K Yusim, MS Seaman, H Yoon, J Theiler, EE Giorgi, K Wagh, ...
Cell host & microbe 25 (1), 59-72. e8, 2019
The hepatitis C sequence database in Los Alamos
C Kuiken, P Hraber, J Thurmond, K Yusim
Nucleic acids research 36 (suppl_1), D512-D516, 2007
Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution
K Yusim, M Peeters, OG Pybus, T Bhattacharya, E Delaporte, C Mulanga, ...
Philosophical Transactions of the Royal Society of London. Series B …, 2001
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