Efficient parameter estimation and implementation of a contour integral-based eigensolver T Sakurai, Y Futamura, H Tadano Journal of Algorithms & Computational Technology 7 (3), 249-269, 2013 | 67 | 2013 |

Parallel stochastic estimation method of eigenvalue distribution Y Futamura, H Tadano, T Sakurai JSIAM Letters 2, 127-130, 2010 | 57 | 2010 |

Stochastic estimation of nuclear level density in the nuclear shell model: An application to parity-dependent level density in 58Ni N Shimizu, Y Utsuno, Y Futamura, T Sakurai, T Mizusaki, T Otsuka Physics Letters B 753, 13-17, 2016 | 41 | 2016 |

iLoc-miRNA: extracellular/intracellular miRNA prediction using deep BiLSTM with attention mechanism ZY Zhang, L Ning, X Ye, YH Yang, Y Futamura, T Sakurai, H Lin Briefings in Bioinformatics 23 (5), bbac395, 2022 | 36 | 2022 |

Stochastic estimation method of eigenvalue density for nonlinear eigenvalue problem on the complex plane Y Maeda, Y Futamura, T Sakurai JSIAM letters 3, 61-64, 2011 | 36 | 2011 |

Efficient calculation of electronic structure using O (N) density functional theory A Nakata, Y Futamura, T Sakurai, DR Bowler, T Miyazaki Journal of chemical theory and computation 13 (9), 4146-4153, 2017 | 26 | 2017 |

Numerical construction of a low-energy effective Hamiltonian in a self-consistent Bogoliubov–de Gennes approach of superconductivity Y Nagai, Y Shinohara, Y Futamura, Y Ota, T Sakurai Journal of the Physical Society of Japan 82 (9), 094701, 2013 | 23 | 2013 |

Efficient algorithm for linear systems arising in solutions of eigenproblems and its application to electronic-structure calculations Y Futamura, T Sakurai, S Furuya, JI Iwata High Performance Computing for Computational Science-VECPAR 2012: 10th …, 2013 | 17 | 2013 |

Benefits from using mixed precision computations in the ELPA-AEO and ESSEX-II eigensolver projects A Alvermann, A Basermann, HJ Bungartz, C Carbogno, D Ernst, H Fehske, ... Japan Journal of Industrial and Applied Mathematics 36, 699-717, 2019 | 16 | 2019 |

Extracellular vesicles derived from Wharton’s Jelly mesenchymal stem cells inhibit the tumor environment via the miR-125b/HIF1α signaling pathway YH Chang, CK Vuong, NH Ngo, T Yamashita, X Ye, Y Futamura, ... Scientific Reports 12 (1), 13550, 2022 | 14 | 2022 |

Detecting interactive gene groups for single-cell RNA-Seq data based on co-expression network analysis and subgraph learning X Ye, W Zhang, Y Futamura, T Sakurai Cells 9 (9), 1938, 2020 | 12 | 2020 |

Scalable eigen-analysis engine for large-scale eigenvalue problems T Sakurai, Y Futamura, A Imakura, T Imamura Advanced Software Technologies for Post-Peta Scale Computing: The Japanese …, 2019 | 12 | 2019 |

Efficient and scalable calculation of complex band structure using Sakurai-Sugiura method S Iwase, Y Futamura, A Imakura, T Sakurai, T Ono Proceedings of the International Conference for High Performance Computing …, 2017 | 11 | 2017 |

Reduced-Shifted Conjugate-Gradient Method for a Green’s Function: Efficient Numerical Approach in a Nano-structured Superconductor Y Nagai, Y Shinohara, Y Futamura, T Sakurai Journal of the Physical Society of Japan 86 (1), 014708, 2017 | 11 | 2017 |

High Performance Computing for Computational Science VECPAR 2012 Y Futamura, T Sakurai, S Furuya, JI Iwata Lecture Notes in Computer Science 7851, 226, 2013 | 11 | 2013 |

Parallel implementation of the nonlinear semi-NMF based alternating optimization method for deep neural networks A Imakura, Y Inoue, T Sakurai, Y Futamura Neural Processing Letters 47, 815-827, 2018 | 10 | 2018 |

Multiview network embedding for drug-target interactions prediction by consistent and complementary information preserving Y Shang, X Ye, Y Futamura, L Yu, T Sakurai Briefings in Bioinformatics 23 (3), bbac059, 2022 | 8 | 2022 |

Structural analysis based on unsupervised learning: Search for a characteristic low-dimensional space by local structures in atomistic simulations R Tamura, M Matsuda, J Lin, Y Futamura, T Sakurai, T Miyazaki Physical Review B 105 (7), 075107, 2022 | 7 | 2022 |

Filter analysis for the stochastic estimation of eigenvalue counts Y Maeda, Y Futamura, A Imakura, T Sakurai JSIAM Letters 7, 53-56, 2015 | 7 | 2015 |

Block conjugate gradient type methods for the approximation of bilinear form CHA− 1B L Du, Y Futamura, T Sakurai Computers & Mathematics with Applications 66 (12), 2446-2455, 2014 | 7 | 2014 |