Bartek Wilczynski
Bartek Wilczynski
Associate professor, Institute of Informatics, University of Warsaw
Verified email at - Homepage
Cited by
Cited by
Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422, 2009
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ...
Nature genetics 44 (2), 148-156, 2012
Applying dynamic Bayesian networks to perturbed gene expression data
N Dojer, A Gambin, A Mizera, B Wilczyński, J Tiuryn
BMC bioinformatics 7 (1), 249, 2006
A specialized histone H1 variant is required for adaptive responses to complex abiotic stress and related DNA methylation in Arabidopsis
K Rutowicz, M Puzio, J Halibart-Puzio, M Lirski, M Kotliński, MA Kroteń, ...
Plant Physiology 169 (3), 2080-2101, 2015
BNFinder: exact and efficient method for learning Bayesian networks
B Wilczyński, N Dojer
Bioinformatics 25 (2), 286, 2009
Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression
R Archacki, R Yatusevich, D Buszewicz, K Krzyczmonik, J Patryn, ...
Nucleic Acids Research 45 (6), 3116-3129, 2017
Challenges for modeling global gene regulatory networks during development: Insights from Drosophila
B Wilczynski, EEM Furlong
Developmental biology 340 (2), 161-169, 2010
Discovering regulatory binding-site modules using rule-based learning
TR Hvidsten, B Wilczyński, A Kryshtafovych, J Tiuryn, J Komorowski, ...
Genome research 15 (6), 856-866, 2005
Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State
B Wilczynski, YH Liu, ZX Yeo, EEM Furlong
PLOS Computational Biology 8 (12), e1002798, 2012
Dynamic CRM occupancy reflects a temporal map of developmental progression
B Wilczynski, EEM Furlong
Molecular systems biology 6 (1), 2010
Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions
H Niskanen, I Tuszynska, R Zaborowski, M Heinäniemi, S Ylä-Herttuala, ...
Nucleic acids research 46 (4), 1724-1740, 2018
BNFinder2: Faster Bayesian network learning and Bayesian classification
N Dojer, P Bednarz, A Podsiadło, B Wilczyński
Bioinformatics 29 (16), 2068-2070, 2013
Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas
K Stępniak, MA Machnicka, J Mieczkowski, A Macioszek, B Wojtaś, ...
Nature Communications 12 (1), 3621, 2021
Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis
L Ciglar, C Girardot, B Wilczyński, M Braun, EEM Furlong
Development 141 (13), 2633-2643, 2014
Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs
B Wilczynski, N Dojer, M Patelak, J Tiuryn
BMC bioinformatics 10 (1), 82, 2009
Biopython tutorial and cookbook
J Chang, B Chapman, I Friedberg, T Hamelryck, M de Hoon, P Cock, ...
Update, 15-19, 2010
Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data
M Dabrowski, N Dojer, I Krystkowiak, B Kaminska, B Wilczynski
BMC bioinformatics 16, 1-14, 2015
Genome-Wide Analysis of Drosophila RBf2 Protein Highlights the Diversity of RB Family Targets and Possible Role in Regulation of Ribosome Biosynthesis
Y Wei, SS Mondal, R Mouawad, B Wilczyński, RW Henry, DN Arnosti
G3: Genes, Genomes, Genetics 5 (7), 1503-1515, 2015
Coordinated expression and genetic polymorphisms in Grainyhead-like genes in human non-melanoma skin cancers
A Kikulska, T Rausch, E Krzywinska, M Pawlak, B Wilczynski, V Benes, ...
BMC cancer 18, 1-12, 2018
Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data
A Podsiadło, M Wrzesień, W Paja, W Rudnicki, B Wilczyński
BMC systems biology 7, 1-7, 2013
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