Yasushi Ishihama
Yasushi Ishihama
Professor, Grad Schl of Pharm Sci, Kyoto University
Verified email at
Cited by
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Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
J Rappsilber, M Mann, Y Ishihama
Nature protocols 2 (8), 1896-1906, 2007
Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
J Rappsilber, Y Ishihama, M Mann
Analytical chemistry 75 (3), 663-670, 2003
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein* s
Y Ishihama, Y Oda, T Tabata, T Sato, T Nagasu, J Rappsilber, M Mann
Molecular & Cellular Proteomics 4 (9), 1265-1272, 2005
Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis
T Umezawa, N Sugiyama, M Mizoguchi, S Hayashi, F Myouga, ...
Proceedings of the National Academy of sciences 106 (41), 17588-17593, 2009
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ...
Nucleic acids research, gkw936, 2016
Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry
E Lasonder, Y Ishihama, JS Andersen, AMW Vermunt, A Pain, ...
Nature 419 (6906), 537-542, 2002
Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli
MJ Kerner, DJ Naylor, Y Ishihama, T Maier, HC Chang, AP Stines, ...
Cell 122 (2), 209-220, 2005
Splicing factor SF3b as a target of the antitumor natural product pladienolide
Y Kotake, K Sagane, T Owa, Y Mimori-Kiyosue, H Shimizu, M Uesugi, ...
Nature chemical biology 3 (9), 570-575, 2007
The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics
EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ...
Nucleic acids research 48 (D1), D1145-D1152, 2020
Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis
T Masuda, M Tomita, Y Ishihama
Journal of proteome research 7 (2), 731-740, 2008
PINK1-mediated phosphorylation of the Parkin ubiquitin-like domain primes mitochondrial translocation of Parkin and regulates mitophagy
K Shiba-Fukushima, Y Imai, S Yoshida, Y Ishihama, T Kanao, S Sato, ...
Scientific reports 2 (1), 1002, 2012
Protein abundance profiling of the Escherichia coli cytosol
Y Ishihama, T Schmidt, J Rappsilber, M Mann, FU Hartl, MJ Kerner, ...
BMC genomics 9, 1-17, 2008
Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications* S
N Sugiyama, T Masuda, K Shinoda, A Nakamura, M Tomita, Y Ishihama
Molecular & Cellular Proteomics 6 (6), 1103-1109, 2007
jPOSTrepo: an international standard data repository for proteomes
S Okuda, Y Watanabe, Y Moriya, S Kawano, T Yamamoto, M Matsumoto, ...
Nucleic acids research 45 (D1), D1107-D1111, 2017
Large‐scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
N Sugiyama, H Nakagami, K Mochida, A Daudi, M Tomita, K Shirasu, ...
Molecular systems biology 4 (1), 193, 2008
Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants
H Nakagami, N Sugiyama, K Mochida, A Daudi, Y Yoshida, T Toyoda, ...
Plant physiology 153 (3), 1161-1174, 2010
Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana
T Umezawa, N Sugiyama, F Takahashi, JC Anderson, Y Ishihama, ...
Science signaling 6 (270), rs8-rs8, 2013
Microcolumns with self-assembled particle frits for proteomics
Y Ishihama, J Rappsilber, JS Andersen, M Mann
Journal of chromatography A 979 (1-2), 233-239, 2002
Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics
T Geiger, JR Wisniewski, J Cox, S Zanivan, M Kruger, Y Ishihama, ...
Nature protocols 6 (2), 147-157, 2011
Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics
Y Ishihama, J Rappsilber, M Mann
Journal of proteome research 5 (4), 988-994, 2006
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