Predicting miRNA–disease associations via learning multimodal networks and fusing mixed neighborhood information Z Lou, Z Cheng, H Li, Z Teng, Y Liu, Z Tian Briefings in Bioinformatics 23 (5), bbac159, 2022 | 34 | 2022 |
Constructing an integrated gene similarity network for the identification of disease genes Z Tian, M Guo, C Wang, LL Xing, L Wang, Y Zhang Journal of biomedical semantics 8, 27-41, 2017 | 30 | 2017 |
An improved method for functional similarity analysis of genes based on gene ontology Z Tian, C Wang, M Guo, X Liu, Z Teng BMC systems biology 10, 465-484, 2016 | 23 | 2016 |
Computational drug repositioning using meta-path-based semantic network analysis Z Tian, Z Teng, S Cheng, M Guo BMC Systems Biology 12, 123-134, 2018 | 15 | 2018 |
Learning knowledge graph embedding with a dual-attention embedding network H Fang, Y Wang, Z Tian, Y Ye Expert Systems with Applications 212, 118806, 2023 | 12 | 2023 |
i6mA-Vote: cross-species identification of DNA N6-methyladenine sites in plant genomes based on ensemble learning with voting Z Teng, Z Zhao, Y Li, Z Tian, M Guo, Q Lu, G Wang Frontiers in plant science 13, 845835, 2022 | 11 | 2022 |
ReRF-Pred: predicting amyloidogenic regions of proteins based on their pseudo amino acid composition and tripeptide composition Z Teng, Z Zhang, Z Tian, Y Li, G Wang BMC bioinformatics 22, 1-18, 2021 | 11 | 2021 |
Revealing protein functions based on relationships of interacting proteins and GO terms Z Teng, M Guo, X Liu, Z Tian, K Che Journal of biomedical semantics 8, 9-17, 2017 | 11 | 2017 |
Predicting microbe–drug associations with structure-enhanced contrastive learning and self-paced negative sampling strategy Z Tian, Y Yu, H Fang, W Xie, M Guo Briefings in Bioinformatics 24 (2), bbac634, 2023 | 10 | 2023 |
Refine gene functional similarity network based on interaction networks Z Tian, M Guo, C Wang, X Liu, S Wang BMC bioinformatics 18, 183-193, 2017 | 10 | 2017 |
A stacked ensemble learning framework with heterogeneous feature combinations for predicting ncRNA-protein interaction Q Dai, Z Wang, J Song, X Duan, M Guo, Z Tian 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020 | 8 | 2020 |
MHADTI: predicting drug–target interactions via multiview heterogeneous information network embedding with hierarchical attention mechanisms Z Tian, X Peng, H Fang, W Zhang, Q Dai, Y Ye Briefings in Bioinformatics 23 (6), bbac434, 2022 | 7 | 2022 |
Link prediction on evolving network using tensor-based node similarity X Yang, Z Tian, H Cui, Z Zhang 2012 IEEE 2nd International Conference on Cloud Computing and Intelligence …, 2012 | 6 | 2012 |
SGFSC: speeding the gene functional similarity calculation based on hash tables Z Tian, C Wang, M Guo, X Liu, Z Teng BMC bioinformatics 17, 1-14, 2016 | 5 | 2016 |
Measuring functional similarity of lncRNAs based on variable K-mer profiles of nucleotide sequences Z Teng, L Shi, H Yu, C Wu, Z Tian Methods 212, 21-30, 2023 | 2 | 2023 |
A novel gene functional similarity calculation model by utilizing the specificity of terms and relationships in gene ontology Z Tian, H Fang, Y Ye, Z Zhu BMC bioinformatics 23 (Suppl 1), 47, 2022 | 2 | 2022 |
Data mining and statistical methods for knowledge discovery in diseases based on multimodal omics, volume II T Wang, ME Rentería, Z Tian, J Peng Frontiers in Genetics 14, 1270862, 2023 | 1 | 2023 |
GOGCN: Graph Convolutional Network on Gene Ontology for functional similarity analysis of genes Z Tian, H Fang, Z Teng, Y Ye IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (2 …, 2022 | 1 | 2022 |
SWE: a novel method with semantic-weighted edge for measuring gene functional similarity Z Tian, H Fang, Y Ye, Z Zhu 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020 | 1 | 2020 |
MGCNSS: miRNA–disease association prediction with multi-layer graph convolution and distance-based negative sample selection strategy Z Tian, C Han, L Xu, Z Teng, W Song Briefings in Bioinformatics 25 (3), bbae168, 2024 | | 2024 |