| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 3465 | 2019 |
| StarBEAST2 brings faster species tree inference and accurate estimates of substitution rates HA Ogilvie, RR Bouckaert, AJ Drummond Molecular biology and evolution 34 (8), 2101-2114, 2017 | 476 | 2017 |
| The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula N Imin, NA Mohd-Radzman, HA Ogilvie, MA Djordjevic Journal of Experimental Botany 64 (17), 5395-5409, 2013 | 234 | 2013 |
| Bayesian inference of species networks from multilocus sequence data C Zhang, HA Ogilvie, AJ Drummond, T Stadler Molecular biology and evolution 35 (2), 504-517, 2018 | 208 | 2018 |
| Computational performance and statistical accuracy of* BEAST and comparisons with other methods HA Ogilvie, J Heled, D Xie, AJ Drummond Systematic biology 65 (3), 381-396, 2016 | 125 | 2016 |
| Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides E Thynne, IML Saur, J Simbaqueba, HA Ogilvie, Y Gonzalez‐Cendales, ... Molecular Plant Pathology 18 (6), 811-824, 2017 | 114 | 2017 |
| Advances in computational methods for phylogenetic networks in the presence of hybridization RAL Elworth, HA Ogilvie, J Zhu, L Nakhleh Bioinformatics and phylogenetics: seminal contributions of Bernard Moret …, 2019 | 99 | 2019 |
| Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes HA Ogilvie, N Imin, MA Djordjevic BMC genomics 15, 1-15, 2014 | 85 | 2014 |
| CEP–CEPR1 signalling inhibits the sucrose-dependent enhancement of lateral root growth K Chapman, M Taleski, HA Ogilvie, N Imin, MA Djordjevic Journal of Experimental Botany 70 (15), 3955-3967, 2019 | 58 | 2019 |
| SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ... Genome research 31 (4), 635-644, 2021 | 55* | 2021 |
| Complexity of avian evolution revealed by family-level genomes J Stiller, S Feng, AA Chowdhury, I Rivas-González, DA Duchêne, Q Fang, ... Nature 629 (8013), 851-860, 2024 | 54 | 2024 |
| Practical Aspects of Phylogenetic Network Analysis Using PhyloNet Z Cao, X Liu, HA Ogilvie, Z Yan, L Nakhleh Species Tree Inference: A Guide to Methods and Applications, 89-119, 2023 | 37* | 2023 |
| microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula RP Eyles, PH Williams, SJ Ohms, GF Weiller, HA Ogilvie, MA Djordjevic, ... Planta 238, 91-105, 2013 | 37 | 2013 |
| Maximum parsimony inference of phylogenetic networks in the presence of polyploid complexes Z Yan, Z Cao, Y Liu, HA Ogilvie, L Nakhleh Systematic Biology 71 (3), 706-720, 2022 | 27 | 2022 |
| A divide-and-conquer method for scalable phylogenetic network inference from multilocus data J Zhu, X Liu, HA Ogilvie, LK Nakhleh Bioinformatics 35 (14), i370-i378, 2019 | 24 | 2019 |
| Joint inference of species histories and gene flow NF Müller, HA Ogilvie, C Zhang, MC Fontaine, JE Amaya-Romero, ... bioRxiv, 348391, 2021 | 21 | 2021 |
| Novel integrative modeling of molecules and morphology across evolutionary timescales HA Ogilvie, FK Mendes, TG Vaughan, NJ Matzke, T Stadler, D Welch, ... Systematic Biology 71 (1), 208-220, 2022 | 20* | 2022 |
| Unifying gene duplication, loss, and coalescence on phylogenetic networks P Du, HA Ogilvie, L Nakhleh International Symposium on Bioinformatics Research and Applications, 40-51, 2019 | 16 | 2019 |
| Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology AC Afonso Silva, N Santos, HA Ogilvie, C Moritz PeerJ 5, e3724, 2017 | 15 | 2017 |
| Phylogenomic assessment of the role of hybridization and introgression in trait evolution Y Wang, Z Cao, HA Ogilvie, L Nakhleh PLoS genetics 17 (8), e1009701, 2021 | 12 | 2021 |
Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerified email at cs.auckland.ac.nz
