Arzucan Ozgur

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Citations	5550	3820
h-index	34	27
i10-index	79	65

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Elif OzkirimliHead of Data Science and Advanced Analytics, RocheVerified email at boun.edu.tr
Hakime ÖztürkGerman Cancer Research Center (DKFZ)Verified email at dkfz-heidelberg.de
Tunga GungorBogazici UniversityVerified email at boun.edu.tr
Dragomir RadevProfessor, Computer Science, Yale UniversityVerified email at yale.edu
Yongqun HeProfessor, University of Michigan Medical SchoolVerified email at med.umich.edu
Junguk HurAssociate ProfessorVerified email at med.und.edu
İlknur KaradenizAssistant Professor at Özyeğin UniversityVerified email at ozyegin.edu.tr
Gunes ErkanGoogle Inc.Verified email at umich.edu
Kutlu O. UlgenProfessor of Chemical Engineering, Bogazici UniversityVerified email at boun.edu.tr
Tunahan CakirDepartment of Bioengineering, Gebze Technical UniversityVerified email at gtu.edu.tr
Fatih Erdogan SevilgenBoğaziçi UniversityVerified email at boun.edu.tr
Saliha DurmuşPhiTech BioinformaticsVerified email at phitech.com.tr
Gizem SoğancıoğluPhd Student, Utrecht UniversityVerified email at uu.nl
Haluk (O.) BingolProfessor of Faculty of Computer Information Sciences, Yeditepe UniversityVerified email at yeditepe.edu.tr
Vahed QazvinianPraisidio; Google; University of Michigan, Ann ArborVerified email at google.com
Jianyi YangProfessor, Shandong UniversityVerified email at sdu.edu.cn
Wallace KB ChanAstraZenecaVerified email at astrazeneca.com
Yang ZhangNational University of SingaporeVerified email at nus.edu.sg
Yuanyuan TianMicrosoft Gray Systems Lab (GSL)Verified email at umich.edu
Çağıl SönmezBoğaziçi UniversityVerified email at boun.edu.tr

Arzucan Ozgur

Department of Computer Engineering, Bogazici University

Verified email at boun.edu.tr - Homepage

Bioinformatics Natural Language Processing BioNLP


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
DeepDTA: deep drug–target binding affinity prediction H Öztürk, A Özgür, E Ozkirimli Bioinformatics 34 (17), i821-i829, 2018	1138	2018
Identifying gene-disease associations using centrality on a literature mined gene-interaction network A Özgür, T Vu, G Erkan, DR Radev Bioinformatics 24 (13), i277-i285, 2008	433	2008
Text categorization with class-based and corpus-based keyword selection A Özgür, L Özgür, T Güngör Computer and Information Sciences-ISCIS 2005: 20th International Symposium …, 2005	219	2005
WideDTA: prediction of drug-target binding affinity H Öztürk, E Ozkirimli, A Özgür arXiv preprint arXiv:1902.04166, 2019	197	2019
BIOSSES: a semantic sentence similarity estimation system for the biomedical domain G Soğancıoğlu, H Öztürk, A Özgür Bioinformatics 33 (14), i49-i58, 2017	185	2017
Semi-supervised classification for extracting protein interaction sentences using dependency parsing G Erkan, A Özgür, D Radev Proceedings of the 2007 Joint Conference on Empirical Methods in Natural …, 2007	184	2007
PHISTO: pathogen–host interaction search tool S Durmuş Tekir, T Çakır, E Ardıç, AS Sayılırbaş, G Konuk, M Konuk, ... Bioinformatics 29 (10), 1357-1358, 2013	165	2013
Exploring chemical space using natural language processing methodologies for drug discovery H Öztürk, A Özgür, P Schwaller, T Laino, E Ozkirimli Drug Discovery Today 25 (4), 689-705, 2020	149	2020
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction H Öztürk, E Ozkirimli, A Özgür BMC bioinformatics 17, 1-11, 2016	139	2016
Citation summarization through keyphrase extraction V Qazvinian, D Radev, A Özgür Proceedings of the 23rd international conference on computational …, 2010	138	2010
A review on computational systems biology of pathogen–host interactions S Durmuş, T Çakır, A Özgür, R Guthke Frontiers in microbiology 6, 235, 2015	128	2015
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations WKB Chan, H Zhang, J Yang, JR Brender, J Hur, A Özgür, Y Zhang Bioinformatics 31 (18), 3035-3042, 2015	126	2015
Michigan molecular interactions r2: from interacting proteins to pathways VG Tarcea, T Weymouth, A Ade, A Bookvich, J Gao, V Mahavisno, ... Nucleic acids research 37 (suppl_1), D642-D646, 2009	117	2009
Supervised and unsupervised machine learning techniques for text document categorization A Ozgur Unpublished Master’s Thesis, İstanbul: Boğaziçi University, 2004	109	2004
Classification of Beta-Lactamases and Penicillin Binding Proteins Using Ligand-Centric Network Models. H Öztürk, E Ozkirimli, A Özgür PloS one 10 (2), e0117874-e0117874, 2015	105	2015
Introducing meta-services for biomedical information extraction F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ... Genome biology 9, 1-11, 2008	95	2008
Improving Named Entity Recognition for Morphologically Rich Languages using Word Embeddings H Demir, A Özgür International Conference on Machine Learning and Applications (ICMLA), 2014	93	2014
Detecting speculations and their scopes in scientific text A Özgür, D Radev Proceedings of the 2009 conference on empirical methods in natural language …, 2009	90	2009
Balancing Methods for Multi-label Text Classification with Long-Tailed Class Distribution Y Huang, B Giledereli, A Köksal, A Özgür, E Ozkirimli Proceedings of the 2021 Conference on Empirical Methods in Natural Language …, 2021	78	2021
Mining of vaccine-associated IFN-g gene interaction networks using the Vaccine Ontology A Özgür, Z Xiang, DR Radev, Y He J Biomed Semantics 2 (Suppl 2), 2011	71	2011

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