Giulia Palermo
Giulia Palermo
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Allostery in its many disguises: from theory to applications
SJ Wodak, E Paci, NV Dokholyan, IN Berezovsky, A Horovitz, J Li, ...
Structure 27 (4), 566-578, 2019
Valence and conduction band tuning in halide perovskites for solar cell applications
S Meloni, G Palermo, N Ashari-Astani, M Grätzel, U Rothlisberger
Journal of Materials Chemistry A 4 (41), 15997-16002, 2016
Catalytic metal ions and enzymatic processing of DNA and RNA
G Palermo, A Cavalli, ML Klein, M Alfonso-Prieto, M Dal Peraro, ...
Accounts of chemical research 48 (2), 220-228, 2015
CRISPR-Cas9 conformational activation as elucidated from enhanced molecular simulations
G Palermo, Y Miao, RC Walker, M Jinek, JA McCammon
Proceedings of the National Academy of Sciences 114 (28), 7260-7265, 2017
Gaussian accelerated molecular dynamics: Principles and applications
J Wang, PR Arantes, A Bhattarai, RV Hsu, S Pawnikar, YM Huang, ...
WIREs Computational Molecular Science, e1521, 2021
Fighting cancer with transition metal complexes: from naked DNA to protein and chromatin targeting strategies
G Palermo, A Magistrato, T Riedel, T Von Erlach, CA Davey, PJ Dyson, ...
ChemMedChem 11 (12), 1199-1210, 2016
Striking plasticity of CRISPR-Cas9 and key role of non-target DNA, as revealed by molecular simulations
G Palermo, Y Miao, RC Walker, M Jinek, JA McCammon
ACS central science 2 (10), 756-763, 2016
Protospacer Adjacent Motif-Induced Allostery Activates CRISPR-Cas9
G Palermo, CG Ricci, A Fernando, R Basak, M Jinek, I Rivalta, ...
Journal of the American Chemical Society, 2017
Key role of the REC lobe during CRISPR–Cas9 activation by ‘sensing’,‘regulating’, and ‘locking’the catalytic HNH domain
G Palermo, JS Chen, CG Ricci, I Rivalta, M Jinek, VS Batista, JA Doudna, ...
Quarterly reviews of biophysics 51, e9, 2018
Deciphering off-target effects in CRISPR-Cas9 through accelerated molecular dynamics
CG Ricci, JS Chen, Y Miao, M Jinek, JA Doudna, JA McCammon, ...
ACS central science 5 (4), 651-662, 2019
Allosteric Motions of the CRISPR–Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics
KD East, JC Newton, UN Morzan, B Narkhede, Yogesh, A Acharya, ...
Journal of the American Chemical Society 142 (3), 1348-1358, 2020
Who activates the nucleophile in ribozyme catalysis? An answer from the splicing mechanism of group II introns
L Casalino, G Palermo, U Rothlisberger, A Magistrato
Journal of the American Chemical Society 138 (33), 10374-10377, 2016
Catalytic Mechanism of Non-Target DNA Cleavage in CRISPR-Cas9 Revealed by Ab Initio Molecular Dynamics
L Casalino, L Nierzwicki, M Jinek, G Palermo
ACS Catalysis, 2020
Structural basis for Cas9 off-target activity
M Pacesa, CH Lin, A Cléry, A Saha, PR Arantes, K Bargsten, MJ Irby, ...
Cell 185 (22), 4067-4081. e21, 2022
All-atom simulations disentangle the functional dynamics underlying gene maturation in the intron lariat spliceosome
L Casalino, G Palermo, A Spinello, U Rothlisberger, A Magistrato
Proceedings of the National Academy of Sciences 115 (26), 6584-6589, 2018
Allosteric cross-talk in chromatin can mediate drug-drug synergy
Z Adhireksan*, G Palermo*, T Riedel*, Z Ma, R Muhammad, ...
Nature Communications 8, 2017
Structure and dynamics of the CRISPR–Cas9 catalytic complex
G Palermo
Journal of Chemical Information and Modeling 59 (5), 2394-2406, 2019
Effect of Electronegative Substituents and Angular Dependence on the Heteronuclear Spin−Spin Coupling Constant 3JC−H: An Empirical Prediction Equation …
G Palermo, R Riccio, G Bifulco
The Journal of Organic Chemistry 75 (6), 1982-1991, 2010
Fighting COVID-19 Using Molecular Dynamics Simulations
PR Arantes, A Saha, G Palermo
ACS Central Science, 2020
Development of Site-specific Mg2+-RNA Force Field Parameters: A Dream or Reality? Guidelines from Combined Molecular Dynamics and Quantum Mechanics Simulations
L Casalino, G Palermo, N Abdurakhmonova, U Rothlisberger, ...
Journal of Chemical Theory and Computation 13 (1), 340-352, 2017
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