Robert Jernigan

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Andrzej KloczkowskiProfessor of Pediatrics, The Ohio State University, Institute for Genomic Medicine, NCHVerified email at osu.edu
Ivet BaharDistinguished Professor and John K Vries Chair, Computational & Systems Biology, U of PittsburghVerified email at pitt.edu
Sanzo MiyazawaSee: https://orcid.org/0000-0002-5063-3661Verified email at sanzo.org
Michael T. ZimmermannAssistant Professor of Bioinformatics, Medical College of WisconsinVerified email at mcw.edu
Victor ZhurkinNCI, NIHVerified email at nih.gov
Drena DobbsUniversity Professor, Emerita, Genetics, Development & Cell Biology, Iowa State UniversityVerified email at iastate.edu
Ozlem KeskinProf of Chemical & Biological Engineering, Koc University, Istanbul TurkeyVerified email at ku.edu.tr
Akinori SaraiProfessor, Kyushu Institute of TechnologyVerified email at sanzo.org
Vasant G HonavarDorothy Foehr Huck and J. Lloyd Huck Chair in Biomedical Data Sciences and Artificial IntelligenceVerified email at psu.edu
Taner Z. SenResearch Scientist, USDA-ARS, GrainGenes / Adj. Assoc. Prof., UC BerkeleyVerified email at usda.gov
Ali Rana AtilganProfessor at Sabanci University and Adjunct Professor at Bogazici University, Istanbul, TurkeyVerified email at sabanciuniv.edu
Pemra DorukerUniversity of Pittsburgh, Bogazici UniversityVerified email at pitt.edu
Guang SongDepartment of Computer Science, Iowa State UniversityVerified email at iastate.edu
Andrzej KolinskiProfessor, University of WarsawVerified email at chem.uw.edu.pl
Ruth NussinovProfessor and Senior Principal Investigator, National Cancer Institute and Tel Aviv UniversityVerified email at post.tau.ac.il
Lei YangResearch Scientist - Data Scientist, DuPont PioneerVerified email at ustc.edu
Kejue JiaPostdoc Research Associate in Biochemistry, Biophysics & Molecular Biology, Iowa State UniversityVerified email at iastate.edu
Kannan SankarBioinformatics Data Scientist at Novartis Institutes for Biomedical Research (NIBR)Verified email at novartis.com
Melik C. DemirelLloyd and Dorothy Huck Chair Professor in Biomimetic Materials and Director of CRAFT centerVerified email at psu.edu
Burak ErmanKoc UniversityVerified email at ku.edu.tr

Robert Jernigan

Curtiss Distinguished Professor in Biochemistry, Biophysics & Molecular Biology, Iowa State

Verified email at iastate.edu - Homepage

molecular calculations and simulations sequence comparisons


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Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation S Miyazawa, RL Jernigan Macromolecules 18 (3), 534-552, 1985	1914	1985
Anisotropy of fluctuation dynamics of proteins with an elastic network model AR Atilgan, SR Durell, RL Jernigan, MC Demirel, O Keskin, I Bahar Biophysical journal 80 (1), 505-515, 2001	1684	2001
Residue–residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading S Miyazawa, RL Jernigan Journal of molecular biology 256 (3), 623-644, 1996	1417	1996
Conformational energies of n-alkanes and the random configuration of higher homologs including polymethylene A Abe, RL Jernigan, PJ Flory Journal of the American Chemical Society 88 (4), 631-639, 1966	622	1966
A role for surface hydrophobicity in protein‐protein recognition L Young, RL Jernigan, DG Covell Protein Science 3 (5), 717-729, 1994	484	1994
Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation I Bahar, RL Jernigan Journal of molecular biology 266 (1), 195-214, 1997	351	1997
Structure-derived potentials and protein simulations RL Jernigan, I Bahar Current opinion in structural biology 6 (2), 195-209, 1996	338	1996
Global ribosome motions revealed with elastic network model Y Wang, AJ Rader, I Bahar, RL Jernigan Journal of structural biology 147 (3), 302-314, 2004	324	2004
Conformations of folded proteins in restricted spaces DG Covell, RL Jernigan Biochemistry 29 (13), 3287-3294, 1990	316	1990
Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function I Bahar, B Erman, RL Jernigan, AR Atilgan, DG Covell Journal of molecular biology 285 (3), 1023-1037, 1999	272	1999
Dynamics of large proteins through hierarchical levels of coarse‐grained structures P Doruker, RL Jernigan, I Bahar Journal of computational chemistry 23 (1), 119-127, 2002	265	2002
Protein elastic network models and the ranges of cooperativity L Yang, G Song, RL Jernigan Proceedings of the National Academy of Sciences 106 (30), 12347-12352, 2009	255	2009
GOR V server for protein secondary structure prediction TZ Sen, RL Jernigan, J Garnier, A Kloczkowski Bioinformatics 21 (11), 2787-2788, 2005	249	2005
Crystal structures of the CusA efflux pump suggest methionine-mediated metal transport F Long, CC Su, MT Zimmermann, SE Boyken, KR Rajashankar, ... Nature 467 (7314), 484-488, 2010	237	2010
How well can we understand large-scale protein motions using normal modes of elastic network models? L Yang, G Song, RL Jernigan Biophysical journal 93 (3), 920-929, 2007	236	2007
Coagulation factors V and VIII and ceruloplasmin constitute a family of structurally related proteins. WR Church, RL Jernigan, J Toole, RM Hewick, J Knopf, GJ Knutson, ... Proceedings of the National Academy of Sciences 81 (22), 6934-6937, 1984	233	1984
Crystal structure of the CusBA heavy-metal efflux complex of Escherichia coli CC Su, F Long, MT Zimmermann, KR Rajashankar, RL Jernigan, EW Yu Nature 470 (7335), 558-562, 2011	228	2011
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins M Terribilini, JD Sander, JH Lee, P Zaback, RL Jernigan, V Honavar, ... Nucleic acids research 35 (suppl_2), W578-W584, 2007	222	2007
Efficient generation of feasible pathways for protein conformational transitions MK Kim, RL Jernigan, GS Chirikjian Biophysical journal 83 (3), 1620-1630, 2002	221	2002
Self‐consistent estimation of inter‐residue protein contact energies based on an equilibrium mixture approximation of residues S Miyazawa, RL Jernigan Proteins: Structure, Function, and Bioinformatics 34 (1), 49-68, 1999	219	1999

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