Maude David
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Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
R Mackelprang, MP Waldrop, KM DeAngelis, MM David, KL Chavarria, ...
Nature 480 (7377), 368-371, 2011
Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes
J Hultman, MP Waldrop, R Mackelprang, MM David, J McFarland, ...
Nature 521 (7551), 208-212, 2015
FOAM (functional ontology assignments for metagenomes): a hidden Markov model (HMM) database with environmental focus
E Prestat, MM David, J Hultman, N Taş, R Lamendella, J Dvornik, ...
Nucleic acids research 42 (19), e145-e145, 2014
Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach
S Demaneche, L Philippot, MM David, E Navarro, TM Vogel, P Simonet
Applied and environmental microbiology 75 (2), 534-537, 2009
In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes
E Dugat‐Bony, C Biderre‐Petit, F Jaziri, MM David, J Denonfoux, DY Lyon, ...
Microbial biotechnology 5 (5), 642-653, 2012
Multi-level analysis of the gut–brain axis shows autism spectrum disorder-associated molecular and microbial profiles
JT Morton, DM Jin, RH Mills, Y Shao, G Rahman, D McDonald, Q Zhu, ...
Nature neuroscience 26 (7), 1208-1217, 2023
Microbial community structure and functional potential along a hypersaline gradient
JA Kimbrel, N Ballor, YW Wu, MM David, TC Hazen, BA Simmons, ...
Frontiers in microbiology 9, 383026, 2018
Microbial ecology of chlorinated solvent biodegradation
MM David, S Cecillon, BM Warne, E Prestat, JK Jansson, TM Vogel
Environmental microbiology 17 (12), 4835-4850, 2015
Cross-disorder comparative analysis of comorbid conditions reveals novel autism candidate genes
L Diaz-Beltran, FJ Esteban, M Varma, A Ortuzk, M David, DP Wall
BMC genomics 18, 1-14, 2017
Evaluation of functional gene enrichment in a soil metagenomic clone library
S Demanèche, MM David, E Navarro, P Simonet, TM Vogel
Journal of microbiological methods 76 (1), 105-107, 2009
Comorbid analysis of genes associated with autism spectrum disorders reveals differential evolutionary constraints
MM David, D Enard, A Ozturk, J Daniels, JY Jung, L Diaz-Beltran, DP Wall
PloS one 11 (7), e0157937, 2016
Modeling of phenoxy acid herbicide mineralization and growth of microbial degraders in 15 soils monitored by quantitative real-time PCR of the functional tfdA gene
J Bælum, E Prestat, MM David, BW Strobel, CS Jacobsen
Applied and environmental microbiology 78 (15), 5305-5312, 2012
Identification of active oxalotrophic bacteria by Bromodeoxyuridine DNA labeling in a microcosm soil experiments
D Bravo, G Martin, MM David, G Cailleau, E Verrecchia, P Junier
FEMS microbiology letters 348 (2), 103-111, 2013
Thousands of small, novel genes predicted in global phage genomes
BJ Fremin, AS Bhatt, NC Kyrpides, A Sengupta, A Sczyrba, AM da Silva, ...
Cell reports 39 (12), 2022
Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils
A Nemir, MM David, R Perrussel, A Sapkota, P Simonet, JM Monier, ...
Chemosphere 80 (5), 600-607, 2010
Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: A step toward understanding patient subgroups
KA West, X Yin, EM Rutherford, B Wee, J Choi, BS Chrisman, KL Dunlap, ...
Scientific Reports 12 (1), 17034, 2022
Can we accelerate autism discoveries through crowdsourcing?
MM David, BA Babineau, DP Wall
Research in Autism Spectrum Disorders 32, 80-83, 2016
Children with autism and their typically developing siblings differ in amplicon sequence variants and predicted functions of stool-associated microbes
MM David, C Tataru, J Daniels, J Schwartz, J Keating, J Hampton-Marcell, ...
Msystems 6 (2), 10.1128/msystems. 00193-20, 2021
Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies
CD Nicora, BJ Anderson, SJ Callister, AD Norbeck, SO Purvine, ...
Proteomics 13 (18-19), 2776-2785, 2013
Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease
CA Tataru, MM David
PLoS computational biology 16 (5), e1007859, 2020
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