Adrian Altenhoff
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Phylogenetic and functional assessment of orthologs inference projects and methods
AM Altenhoff, C Dessimoz
PLoS computational biology 5 (1), e1000262, 2009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs
AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz
PLoS computational biology 8 (5), e1002514, 2012
OMA 2011: orthology inference among 1000 complete genomes
AM Altenhoff, A Schneider, GH Gonnet, C Dessimoz
Nucleic acids research 39 (suppl_1), D289-D294, 2010
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ...
Nucleic acids research 43 (D1), D240-D249, 2015
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ...
Nucleic acids research 46 (D1), D477-D485, 2018
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
Inferring hierarchical orthologous groups from orthologous gene pairs
AM Altenhoff, M Gil, GH Gonnet, C Dessimoz
PloS one 8 (1), e53786, 2013
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more
AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ...
Nucleic acids research 49 (D1), D373-D379, 2021
Inferring orthology and paralogy
AM Altenhoff, C Dessimoz
Evolutionary Genomics: Statistical and Computational Methods, Volume 1, 259-279, 2012
A gridded hourly precipitation dataset for Switzerland using rain-gauge analysis and radar-based disaggregation
M Wüest, C Frei, A Altenhoff, M Hagen, M Litschi
International Journal of Climatology 30, 1764-1775, 2010
Quality of computationally inferred gene ontology annotations
N Škunca, A Altenhoff, C Dessimoz
PLoS computational biology 8 (5), e1002533, 2012
OMA standalone: orthology inference among public and custom genomes and transcriptomes
AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ...
Genome research 29 (7), 1152-1163, 2019
Linkage of atmospheric blocks and synoptic-scale Rossby waves: A climatological analysis
AM Altenhoff, O Martius, M Croci-Maspoli, C Schwierz, HC Davies
Tellus A: Dynamic Meteorology and Oceanography 60 (5), 1053-1063, 2008
Inferring orthology and paralogy
AM Altenhoff, NM Glover, C Dessimoz
Evolutionary genomics: statistical and computational methods, 149-175, 2019
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference
CM Train, NM Glover, GH Gonnet, AM Altenhoff, C Dessimoz
Bioinformatics 33 (14), i75-i82, 2017
Distinct evolutionary strategies in the GGPPS family from plants
D Coman, A Altenhoff, S Zoller, W Gruissem, E Vranová
Frontiers in Plant Science 5, 90994, 2014
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
A stochastic boundary forcing for dissipative particle dynamics
AM Altenhoff, JH Walther, P Koumoutsakos
Journal of Computational Physics 225 (1), 1125-1136, 2007
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Articles 1–20