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William "Bill" Andreopoulos
William "Bill" Andreopoulos
Assistant Professor, Computer Science, San Jose State University
Verified email at lbl.gov
Title
Cited by
Cited by
Year
Data classification
CC Aggarwal, CC Aggarwal
Data Mining: The Textbook, 285-344, 2015
30902015
A roadmap of clustering algorithms: finding a match for a biomedical application
B Andreopoulos, A An, X Wang, M Schroeder
Briefings in bioinformatics 10 (3), 297-314, 2009
3172009
Widespread adenine N6-methylation of active genes in fungi
SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ...
Nature genetics 49 (6), 964-968, 2017
2932017
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ...
Nature communications 11 (1), 5125, 2020
2672020
Megaphylogeny resolves global patterns of mushroom evolution
T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ...
Nature Ecology & Evolution 3 (4), 668-678, 2019
2062019
Unraveling protein networks with power graph analysis
L Royer, M Reimann, B Andreopoulos, M Schroeder
PLoS computational biology 4 (7), e1000108, 2008
1802008
101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens
S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ...
Studies in mycology 96 (1), 141-153, 2020
1652020
Phage-specific metabolic reprogramming of virocells
C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ...
The ISME journal 14 (4), 881-895, 2020
1382020
Leveraging single-cell genomics to expand the fungal tree of life
SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ...
Nature Microbiology 3 (12), 1417-1428, 2018
1102018
Next generation sequencing data of a defined microbial mock community
E Singer, B Andreopoulos, RM Bowers, J Lee, S Deshpande, J Chiniquy, ...
Scientific data 3 (1), 1-8, 2016
952016
Genomic analysis enlightens Agaricales lifestyle evolution and increasing peroxidase diversity
FJ Ruiz-Dueñas, JM Barrasa, M Sánchez-García, S Camarero, ...
Molecular Biology and Evolution 38 (4), 1428-1446, 2021
732021
Genetic determinants of endophytism in the Arabidopsis root mycobiome
F Mesny, S Miyauchi, T Thiergart, B Pickel, L Atanasova, M Karlsson, ...
Nature communications 12 (1), 7227, 2021
652021
Convolutional neural networks and extreme learning machines for malware classification
M Jain, W Andreopoulos, M Stamp
Journal of Computer Virology and Hacking Techniques 16, 229-244, 2020
512020
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy
D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ...
BMC bioinformatics 10, 1-15, 2009
512009
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613
H Park, B Min, Y Jang, J Kim, A Lipzen, A Sharma, B Andreopoulos, ...
Applied microbiology and biotechnology 103, 8145-8155, 2019
482019
Clustering large software systems at multiple layers
B Andreopoulos, A An, V Tzerpos, X Wang
Information and Software Technology 49 (3), 244-254, 2007
462007
Clustering by common friends finds locally significant proteins mediating modules
B Andreopoulos, A An, X Wang, M Faloutsos, M Schroeder
Bioinformatics 23 (9), 1124-1131, 2007
402007
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
LA Lofgren, NH Nguyen, R Vilgalys, J Ruytinx, HL Liao, S Branco, A Kuo, ...
New Phytologist 230 (2), 774-792, 2021
382021
Hierarchical density-based clustering of categorical data and a simplification
B Andreopoulos, A An, X Wang
Advances in Knowledge Discovery and Data Mining: 11th Pacific-Asia …, 2007
352007
Bi-level clustering of mixed categorical and numerical biomedical data
B Andreopoulos, A An, X Wang
International Journal of Data Mining and Bioinformatics 1 (1), 19-56, 2006
352006
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Articles 1–20