| Building digital twins of the human immune system: toward a roadmap R Laubenbacher, A Niarakis, T Helikar, G An, B Shapiro, RS Malik-Sheriff, ... npj Digital Medicine 5 (1), 64, 2022 | 51 | 2022 |
| A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to … TJ Sego, JO Aponte-Serrano, JF Gianlupi, SR Heaps, K Breithaupt, ... PLoS Computational Biology, 2020 | 51 | 2020 |
| A heuristic computational model of basic cellular processes and oxygenation during spheroid-dependent biofabrication TJ Sego, U Kasacheuski, D Hauersperger, A Tovar, NI Moldovan Biofabrication 9 (2), 024104, 2017 | 27 | 2017 |
| Compartmental model suggests importance of innate immune response to COVID-19 infection in rhesus macaques E Mochan, TJ Sego, L Gaona, E Rial, GB Ermentrout Bulletin of mathematical biology 83 (7), 79, 2021 | 15 | 2021 |
| Computational Fluid Dynamic Analysis of Bioprinted Self‐Supporting Perfused (SSuPer) Tissue Models TJ Sego, M Prideaux, J Sterner, BP McCarthy, P Li, LF Bonewald, B Ekser, ... Biotechnology and Bioengineering, 2019 | 14 | 2019 |
| Multiscale Model of Antiviral Timing, Potency, and Heterogeneity Effects on an Epithelial Tissue Patch Infected by SARS-CoV-2 J Ferrari Gianlupi, T Mapder, TJ Sego, JP Sluka, SK Quinney, M Craig, ... Viruses 14 (3), 605, 2022 | 13 | 2022 |
| Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics JO Aponte-Serrano, JJA Weaver, TJ Sego, JA Glazier, JE Shoemaker PLoS Computational Biology 17 (10), e1008874, 2021 | 13 | 2021 |
| A multiscale multicellular spatiotemporal model of local influenza infection and immune response TJ Sego, ED Mochan, GB Ermentrout, JA Glazier Journal of Theoretical Biology 532, 110918, 2022 | 12 | 2022 |
| Generation of multicellular spatiotemporal models of population dynamics from ordinary differential equations, with applications in viral infection TJ Sego, JO Aponte-Serrano, JF Gianlupi, JA Glazier BMC biology 19, 1-24, 2021 | 11 | 2021 |
| Advancing therapies for viral infections using mechanistic computational models of the dynamic interplay between the virus and host immune response VI Zarnitsyna, JF Gianlupi, A Hagar, TJ Sego, JA Glazier Current Opinion in Virology 50, 103-109, 2021 | 10 | 2021 |
| A Modular Framework for Multiscale Spatial Modeling of Viral Infection and Immune Response in Epithelial Tissue TJ Sego, JO Aponte-Serrano, J Ferrari-Gianlupi, S Heaps, EM Quardokus, ... bioRxiv, 2020.04. 27.064139, 2020 | 8 | 2020 |
| Tissue forge: interactive biological and biophysics simulation environment TJ Sego, JP Sluka, HM Sauro, JA Glazier PLOS Computational Biology 19 (10), e1010768, 2023 | 6 | 2023 |
| Unification of aggregate growth models by emergence from cellular and intracellular mechanisms TJ Sego, JA Glazier, A Tovar Royal Society Open Science 7 (8), 192148, 2020 | 5 | 2020 |
| Building digital twins of the human immune system: toward a roadmap. npj Digital Medicine 5 R Laubenbacher, A Niarakis, T Helikar, G An, B Shapiro, R Malik-Sheriff, ... | 4 | 2022 |
| Generating Agent-Based Multiscale Multicellular Spatiotemporal Models from Ordinary Differential Equations of Biological Systems, with Applications in Viral Infection TJ Sego, JO Aponte-Serrano, JF Gianlupi, JA Glazier bioRxiv, 2021.01. 28.428647, 2021 | 4 | 2021 |
| Modeling progressive damage accumulation in bone remodeling explains the thermodynamic basis of bone resorption by overloading TJ Sego, YT Hsu, TM Chu, A Tovar Bulletin of Mathematical Biology 82, 1-23, 2020 | 4 | 2020 |
| Towards the Optimal Crown-to-Implant Ratio in Dental Implants TJ Sego, YT Hsu, TMG Chu, A Tovar ASME 2017 International Design Engineering Technical Conferences and …, 2017 | 3 | 2017 |
| General, open-source vertex modeling in biological applications using Tissue Forge TJ Sego, T Comlekoglu, SM Peirce, DW Desimone, JA Glazier Scientific Reports 13 (1), 17886, 2023 | 2 | 2023 |
| Hybrid Kinetic Monte Carlo Models of Cellular Processes in Interactive Dynamic Microenvironments TJ Sego Purdue University, 2019 | 2 | 2019 |
| Agent-Based Numerical Methods for 3D Bioprinting in Tissue Engineering TJ Sego, NI Moldovan, A Tovar Numerical Methods and Advanced Simulation in Biomechanics and Biological …, 2018 | 2 | 2018 |
James A GlazierIndiana UniversityVerified email at indiana.edu
