Wolfgang Gerlach
Wolfgang Gerlach
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Cited by
Cited by
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
The MG-RAST metagenomics database and portal in 2015
A Wilke, J Bischof, W Gerlach, E Glass, T Harrison, KP Keegan, T Paczian, ...
Nucleic acids research 44 (D1), D590-D594, 2016
Taxonomic Classification of Metagenomic Shotgun Sequences with CARMA3
W Gerlach, J Stoye
Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes: Basics …, 2015
Taxonomic classification of metagenomic shotgun sequences with CARMA3
W Gerlach, J Stoye
Nucleic acids research 39 (14), e91-e91, 2011
Skyport – Container-Based Execution Environment Management for Multi-Cloud Scientific Workflows
W Gerlach, W Tang, KP Keegan, T Harrison, A Wilke, J Bischof, ...
Proceedings of the 5th International Workshop on Data Intensive Computing in …, 2014
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
W Gerlach, S Jünemann, F Tille, A Goesmann, J Stoye
BMC bioinformatics 10 (1), 1-10, 2009
MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis
F Meyer, S Bagchi, S Chaterji, W Gerlach, A Grama, T Harrison, T Paczian, ...
Briefings in bioinformatics 20 (4), 1151-1159, 2019
A RESTful API for accessing microbial community data for MG-RAST
A Wilke, J Bischof, T Harrison, T Brettin, MD Souza, W Gerlach, ...
PLOS Computational Biology, 2015
The DOE Systems Biology Knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
bioRxiv, 096354, 2016
GUUGle: a utility for fast exact matching under RNA complementary rules including G–U base pairing
W Gerlach, R Giegerich
Bioinformatics 22 (6), 762-764, 2006
Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads
A Mahgoub, P Wood, S Ganesh, S Mitra, W Gerlach, T Harrison, F Meyer, ...
Proceedings of the 18th ACM/IFIP/USENIX Middleware Conference, 28-40, 2017
A Scalable Data Analysis Platform for Metagenomics
W Tang, J Wilkening, N Desai, W Gerlach, A Wilke, F Meyer
IEEE International Conference on Big Data, 2013
Engineering a compressed suffix tree implementation
N Välimäki, V Mäkinen, W Gerlach, K Dixit
Journal of Experimental Algorithmics (JEA) 14, 4.2-4.23, 2010
Compressed suffix tree—a basis for genome-scale sequence analysis
N Välimäki, W Gerlach, K Dixit, V Mäkinen
Bioinformatics 23 (5), 629-630, 2007
Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma
B Henrich, M Rumming, A Sczyrba, E Velleuer, R Dietrich, W Gerlach, ...
PloS one 9 (3), e92297, 2014
A metagenomics portal for a democratized sequencing world
A Wilke, EM Glass, D Bartels, J Bischof, D Braithwaite, M D’Souza, ...
Methods in enzymology 531, 487-523, 2013
Container Orchestration for Scientific Workflows
W Gerlach, W Tang, A Wilke, D Olson, F Meyer
Engineering a compressed suffix tree implementation
N Välimäki, W Gerlach, K Dixit, V Mäkinen
6th Workshop on Experimental Algorithms, 217-228, 2007
Workload Characterization for MG-RAST Metagenomic Data Analytics Service in the Cloud
W Tang, J Bischof, N Desai, K Mahadik, W Gerlach, T Harrison, A Wilke, ...
Dynamic FM-Index for a collection of texts with application to space-efficient construction of the compressed suffix array
W Gerlach
Diploma thesis, Universität Bielefeld, Germany, 2007
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Articles 1–20