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Olli Yli-Harja
Olli Yli-Harja
Tampere University, Faculty of Medicine and Health Technology
Verified email at tuni.fi
Title
Cited by
Cited by
Year
Analysis of the properties of median and weighted median filters using threshold logic and stack filter representation
O Yli-Harja, J Astola, Y Neuvo
IEEE Transactions on Signal Processing 39 (2), 395-410, 1991
4441991
On learning gene regulatory networks under the Boolean network model
H Lähdesmäki, I Shmulevich, O Yli-Harja
Machine learning 52, 147-167, 2003
3522003
Software for quantification of labeled bacteria from digital microscope images by automated image analysis
J Selinummi, J Seppälä, O Yli-Harja, JA Puhakka
Biotechniques 39 (6), 859-863, 2005
3262005
High-resolution DNA analysis of human embryonic stem cell lines reveals culture-induced copy number changes and loss of heterozygosity
E Närvä, R Autio, N Rahkonen, L Kong, N Harrison, D Kitsberg, ...
Nature biotechnology 28 (4), 371-377, 2010
3092010
A review of connectivity map and computational approaches in pharmacogenomics
A Musa, LS Ghoraie, SD Zhang, G Glazko, O Yli-Harja, M Dehmer, ...
Briefings in bioinformatics 19 (3), 506-523, 2018
2832018
Gene expression dynamics in the macrophage exhibit criticality
M Nykter, ND Price, M Aldana, SA Ramsey, SA Kauffman, LE Hood, ...
Proceedings of the National Academy of Sciences 105 (6), 1897-1900, 2008
2662008
Computational framework for simulating fluorescence microscope images with cell populations
A Lehmussola, P Ruusuvuori, J Selinummi, H Huttunen, O Yli-Harja
IEEE transactions on medical imaging 26 (7), 1010-1016, 2007
2632007
The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma
BC Parker, MJ Annala, DE Cogdell, KJ Granberg, Y Sun, P Ji, X Li, ...
The Journal of clinical investigation 123 (2), 2013
2522013
Robust quantification of in vitro angiogenesis through image analysis
A Niemisto, V Dunmire, O Yli-Harja, W Zhang, I Shmulevich
IEEE transactions on medical imaging 24 (4), 549-553, 2005
2252005
Robust detection of periodic time series measured from biological systems
M Ahdesmäki, H Lähdesmäki, R Pearson, H Huttunen, O Yli-Harja
BMC bioinformatics 6, 1-18, 2005
1672005
Global Gene Expression Profile of Human Cord Blood–Derived CD133+ Cells
T Jaatinen, H Hemmoranta, S Hautaniemi, J Niemi, D Nicorici, J Laine, ...
Stem cells 24 (3), 631-641, 2006
1542006
Perturbation avalanches and criticality in gene regulatory networks
P Rämö, J Kesseli, O Yli-Harja
Journal of Theoretical Biology 242 (1), 164-170, 2006
1522006
Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks
H Lähdesmäki, S Hautaniemi, I Shmulevich, O Yli-Harja
Signal processing 86 (4), 814-834, 2006
1412006
CGH-Plotter: MATLAB toolbox for CGH-data analysis
R Autio, S Hautaniemi, P Kauraniemi, O Yli-Harja, J Astola, M Wolf, ...
Bioinformatics 19 (13), 1714-1715, 2003
1402003
Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images
J Selinummi, P Ruusuvuori, I Podolsky, A Ozinsky, E Gold, O Yli-Harja, ...
PloS one 4 (10), e7497, 2009
1212009
Critical networks exhibit maximal information diversity in structure-dynamics relationships
M Nykter, ND Price, A Larjo, T Aho, SA Kauffman, O Yli-Harja, ...
Physical review letters 100 (5), 058702, 2008
1202008
Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression
KM Turner, Y Sun, P Ji, KJ Granberg, B Bernard, L Hu, DE Cogdell, ...
Proceedings of the National Academy of Sciences 112 (11), 3421-3426, 2015
1182015
Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
P Ruusuvuori, T Äijö, S Chowdhury, C Garmendia-Torres, J Selinummi, ...
BMC bioinformatics 11, 1-17, 2010
1102010
Differential gene expression in adipose stem cells cultured in allogeneic human serum versus fetal bovine serum
B Lindroos, KL Aho, H Kuokkanen, S Räty, H Huhtala, R Lemponen, ...
Tissue Engineering Part A 16 (7), 2281-2294, 2010
1072010
Simulation of microarray data with realistic characteristics
M Nykter, T Aho, M Ahdesmäki, P Ruusuvuori, A Lehmussola, O Yli-Harja
BMC bioinformatics 7, 1-17, 2006
962006
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