SciPy 1.0: fundamental algorithms for scientific computing in Python P Virtanen, R Gommers, TE Oliphant, M Haberland, T Reddy, ... Nature methods 17 (3), 261-272, 2020 | 34596 | 2020 |
scikit-image: image processing in Python S Van der Walt, JL Schönberger, J Nunez-Iglesias, F Boulogne, ... PeerJ 2, e453, 2014 | 5997 | 2014 |
Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation J Nunez-Iglesias, CC Liu, TE Morgan, CE Finch, XJ Zhou PloS one 5 (2), e8898, 2010 | 386 | 2010 |
Synaptic circuits and their variations within different columns in the visual system of Drosophila S Takemura, CS Xu, Z Lu, PK Rivlin, T Parag, DJ Olbris, S Plaza, T Zhao, ... Proceedings of the National Academy of Sciences 112 (44), 13711-13716, 2015 | 277 | 2015 |
Functional annotation and network reconstruction through cross-platform integration of microarray data XJ Zhou, MCJ Kao, H Huang, A Wong, J Nunez-Iglesias, M Primig, ... Nature biotechnology 23 (2), 238-243, 2005 | 186 | 2005 |
Machine learning of hierarchical clustering to segment 2D and 3D images J Nunez-Iglesias, R Kennedy, T Parag, J Shi, DB Chklovskii PloS one 8 (8), e71715, 2013 | 174 | 2013 |
The scikit-image contributors S van der Walt, JL Schönberger, J Nunez-Iglesias, F Boulogne, ... Scikit-image: image processing in Python. PeerJ 2, e453, 2014 | 148 | 2014 |
napari: a multi-dimensional image viewer for Python N Sofroniew, T Lambert, K Evans, J Nunez-Iglesias, G Bokota, P Winston, ... Zenodo, 2022 | 132 | 2022 |
scikitimage: image processing in Python. PeerJ. 2014; 2: e453 S Van der Walt, JL Schönberger, J Nunez-Iglesias, F Boulogne, ... PubMed Abstract| Publisher Full Text| Free Full Text, 2014 | 113 | 2014 |
A new Python library to analyse skeleton images confirms malaria parasite remodelling of the red blood cell membrane skeleton J Nunez-Iglesias, AJ Blanch, O Looker, MW Dixon, L Tilley PeerJ 6, e4312, 2018 | 99 | 2018 |
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain L Heinrich, J Funke, C Pape, J Nunez-Iglesias, S Saalfeld Medical Image Computing and Computer Assisted Intervention–MICCAI 2018: 21st …, 2018 | 96 | 2018 |
the scikit-image contributors: scikit-image: image processing in Python, PeerJ, 2, e453 S van der Walt, JL Schönberger, J Nunez-Iglesias, F Boulogne, ... arXiv preprint arXiv:1407.6245, 2014 | 93 | 2014 |
Image processing in python S Van Der Walt, JL Schönberger, J Nunez-Iglesias, F Boulogne, ... PeerJ 2 (e453), 4-7, 2014 | 88 | 2014 |
An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer M Xu, MCJ Kao, J Nunez-Iglesias, JR Nevins, M West, XJ Zhou BMC genomics 9, 1-12, 2008 | 65 | 2008 |
Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages J Nunez-Iglesias, R Kennedy, SM Plaza, A Chakraborty, WT Katz Frontiers in neuroinformatics 8, 34, 2014 | 61 | 2014 |
Gene Aging Nexus: a web database and data mining platform for microarray data on aging F Pan, CH Chiu, S Pulapura, MR Mehan, J Nunez-Iglesias, K Zhang, ... Nucleic acids research 35 (suppl_1), D756-D759, 2007 | 56 | 2007 |
napari: a multi-dimensional image viewer for Python J Ahlers, DA Moré, O Amsalem, A Anderson, G Bokota, P Boone, ... Zenodo, 1-2, 2023 | 52 | 2023 |
napari/napari: 0.4. 12rc2 N Sofroniew, T Lambert, K Evans, J Nunez-Iglesias, G Bokota, ... Zenodo https://doi. org/10.5281/zenodo 5586292, 2021 | 52 | 2021 |
Recruitment of the adaptor protein 2 complex by the human immunodeficiency virus type 2 envelope protein is necessary for high levels of virus release B Noble, P Abada, J Nunez-Iglesias, PM Cannon Journal of virology 80 (6), 2924-2932, 2006 | 50 | 2006 |
Metabolic sensing in AgRP neurons integrates homeostatic state with dopamine signalling in the striatum A Reichenbach, RE Clarke, R Stark, SH Lockie, M Mequinion, ... Elife 11, e72668, 2022 | 41 | 2022 |