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Pieter C Dorrestein
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
164612019
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
36542016
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature
PG Arnison, MJ Bibb, G Bierbaum, AA Bowers, TS Bugni, G Bulaj, ...
Natural product reports 30 (1), 108-160, 2013
21632013
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
16372018
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ...
Nature methods 16 (4), 299-302, 2019
12452019
Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis
T Nakatsuji, TH Chen, S Narala, KA Chun, AM Two, T Yun, F Shafiq, ...
Science translational medicine 9 (378), eaah4680, 2017
11252017
Mass spectral molecular networking of living microbial colonies
J Watrous, P Roach, T Alexandrov, BS Heath, JY Yang, RD Kersten, ...
Proceedings of the National Academy of Sciences 109 (26), E1743-E1752, 2012
10332012
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
10172020
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
10162018
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
9162015
Microbiome-wide association studies link dynamic microbial consortia to disease
JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ...
Nature 535 (7610), 94-103, 2016
7822016
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018
7302018
ncRNA-and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs
L Yang, C Lin, W Liu, J Zhang, KA Ohgi, JD Grinstein, PC Dorrestein, ...
Cell 147 (4), 773-788, 2011
7072011
Molecular networking as a dereplication strategy
JY Yang, LM Sanchez, CM Rath, X Liu, PD Boudreau, N Bruns, E Glukhov, ...
Journal of natural products 76 (9), 1686-1699, 2013
6792013
Specialized metabolites from the microbiome in health and disease
G Sharon, N Garg, J Debelius, R Knight, PC Dorrestein, SK Mazmanian
Cell metabolism 20 (5), 719-730, 2014
6262014
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
5942018
Illuminating the dark matter in metabolomics
RR da Silva, PC Dorrestein, RA Quinn
Proceedings of the National Academy of Sciences 112 (41), 12549-12550, 2015
5322015
Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity
S Shalapour, XJ Lin, IN Bastian, J Brain, AD Burt, AA Aksenov, ...
Nature 551 (7680), 340-345, 2017
5232017
Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A
K Yamanaka, KA Reynolds, RD Kersten, KS Ryan, DJ Gonzalez, V Nizet, ...
Proceedings of the National Academy of Sciences 111 (5), 1957-1962, 2014
5172014
Reproducible molecular networking of untargeted mass spectrometry data using GNPS
AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ...
Nature protocols 15 (6), 1954-1991, 2020
5132020
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