| Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data CY Lee, Y Chen, Z Duan, M Xu, MJ Girgenti, K Xu, M Gerstein, J Zhang PLOS Computational Biology 18 (10), e1010636, 2022 | 5 | 2022 |
| iHerd: an integrative hierarchical graph representation learning framework to quantify network changes and prioritize risk genes in disease Z Duan, Y Dai, A Hwang, C Lee, K Xie, C Xiao, M Xu, MJ Girgenti, ... PLoS Computational Biology 19 (9), e1011444, 2023 | 1 | 2023 |
| ExAD-GNN: Explainable Graph Neural Network for Alzheimer's Disease State Prediction from Single-cell Data Z Duan, CY Lee, J Zhang APSIPA Transactions on Signal and Information Processing, 2023 | 1 | 2023 |
| Translator: A Transfer Learning Approach to Facilitate Single-Cell ATAC-Seq Data Analysis from Reference Dataset S Xu, M Skarica, A Hwang, Y Dai, C Lee, MJ Girgenti, J Zhang Journal of Computational Biology 29 (7), 619-633, 2022 | 1 | 2022 |
| Single-cell genomics and regulatory networks for 388 human brains PS Emani, JJ Liu, D Clarke, M Jensen, J Warrell, C Gupta, R Meng, ... bioRxiv, 2024.03. 18.585576, 2024 | | 2024 |
| scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embedding Z Duan, S Xu, S Sai Srinivasan, A Hwang, CY Lee, F Yue, M Gerstein, ... Briefings in Bioinformatics 25 (2), bbae096, 2024 | | 2024 |
| Turtling: A Time-aware Neural Topic Model on NIH Grant Data R Zhang, Z Duan, CY Lee, D Riffle, MR Min, J Zhang Bioinformatics Advances, vbad096, 2023 | | 2023 |
| Single-cell genomics & regulatory networks analysis for Alcohol Use Disorder CY Lee, A Hwang, S Xu, J Zhang, MJ Girgenti | | |
| Single cell genomic analysis reveals cell type-specific molecular signatures in the human PTSD prefrontal cortex A Hwang, M Skarica, CY Lee, J Wang, H Li, S Xu, TSBR Group, D Cruz, ... Cell, 0 | | |
| scENCORE: leveraging single-cell epigenetic data to predict genome conformation using graph embedding Z Duan, Y Dai, A Hwang, C Lee, MJ Girgenti, J Zhang Science Advances, 0 | | |
Jing ZhangUniversity of California, IrvineVerified email at uci.edu
