Tamir Tuller (תמיר טולר)

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Eytan RuppinChief, Cancer Data Science Lab (CDSL), NCI/NIHVerified email at nih.gov
martin kupiecProfessor of Genetics, Tel Aviv UniversityVerified email at post.tau.ac.il
Michael MargaliotProfessor of Elec. Eng., Tel Aviv UniversityVerified email at eng.tau.ac.il
Yoram ZaraiTel Aviv UniversityVerified email at mail.tau.ac.il
Benny ChorProfessor of Computer Science, Tel-Aviv UniversityVerified email at cs.tau.ac.il
Alon DiamentPh.D., Biomedical Engineering Department, Tel-Aviv UniversityVerified email at post.tau.ac.il
Sagi SnirUniversity of HaifaVerified email at research.haifa.ac.il
Alexandra DanaTel Aviv UniversityVerified email at post.tau.ac.il
Luay NakhlehProfessor of Computer Science and Dean of Engineering and Computing, Rice UniversityVerified email at rice.edu
Eduardo SontagNortheastern University ECE and BioEVerified email at northeastern.edu
Iddo WeinerBiomX Inc.Verified email at biomx.com
Iftach YacobyAssociate Professor of Biology, Tel Aviv UniversityVerified email at tauex.tau.ac.il
Uri GophnaThe Shmunis School of Biomedicine and Cancer Research, Tel Aviv UniversityVerified email at tauex.tau.ac.il
Noam ShaharPhD Student, Tel-Aviv UniversityVerified email at mail.tau.ac.il
Igor UlitskyWeizmann Institute of ScienceVerified email at weizmann.ac.il
David (Dudu) BursteinTel Aviv UniversityVerified email at tau.ac.il
Kalin VetsigianAssistant Professor of Bacteriology, University of Wisconsin-MadisonVerified email at wisc.edu
Tao PanProfessor of Biochemistry and Molecular Biology, University of ChicagoVerified email at uchicago.edu
Yuval DorfanBio-engineering, HIT, Holon, IsraelVerified email at hit.ac.il
Isaac MeilijsonTel Aviv UniversityVerified email at math.tau.ac.il

Tamir Tuller (תמיר טולר)

Tel Aviv University

Verified email at post.tau.ac.il - Homepage

Computational biology systems biology evolutionary systems biology synthetic biology gene expression.


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An evolutionarily conserved mechanism for controlling the efficiency of protein translation T Tuller, A Carmi, K Vestsigian, S Navon, Y Dorfan, J Zaborske, T Pan, ... Cell 141 (2), 344-354, 2010	984	2010
Translation efficiency is determined by both codon bias and folding energy T Tuller, YY Waldman, M Kupiec, E Ruppin Proceedings of the national academy of sciences 107 (8), 3645-3650, 2010	676	2010
The effect of tRNA levels on decoding times of mRNA codons A Dana, T Tuller Nucleic acids research 42 (14), 9171-9181, 2014	270	2014
The average common substring approach to phylogenomic reconstruction I Ulitsky, D Burstein, T Tuller, B Chor Journal of Computational Biology 13 (2), 336-350, 2006	235	2006
Composite effects of gene determinants on the translation speed and density of ribosomes T Tuller, I Veksler-Lublinsky, N Gazit, M Kupiec, E Ruppin, M Ziv-Ukelson Genome biology 12, 1-18, 2011	223	2011
Genome-scale analysis of translation elongation with a ribosome flow model S Reuveni, I Meilijson, M Kupiec, E Ruppin, T Tuller PLoS computational biology 7 (9), e1002127, 2011	212	2011
Multiple roles of the coding sequence 5′ end in gene expression regulation T Tuller, H Zur Nucleic acids research 43 (1), 13-28, 2015	203	2015
Determinants of protein abundance and translation efficiency in S. cerevisiae T Tuller, M Kupiec, E Ruppin PLoS computational biology 3 (12), e248, 2007	166	2007
Maximum likelihood of evolutionary trees: hardness and approximation B Chor, T Tuller Bioinformatics 21 (suppl_1), i97-i106, 2005	158	2005
Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells A Dana, T Tuller PLoS computational biology 8 (11), e1002755, 2012	148	2012
Maximum likelihood of phylogenetic networks G Jin, L Nakhleh, S Snir, T Tuller Bioinformatics 22 (21), 2604-2611, 2006	145	2006
Modelling the efficiency of codon–tRNA interactions based on codon usage bias R Sabi, T Tuller DNA research 21 (5), 511-526, 2014	132	2014
A model for competition for ribosomes in the cell A Raveh, M Margaliot, ED Sontag, T Tuller Journal of The Royal Society Interface 13 (116), 20151062, 2016	125	2016
Common and specific signatures of gene expression and protein–protein interactions in autoimmune diseases T Tuller, S Atar, E Ruppin, M Gurevich, A Achiron Genes & Immunity 14 (2), 67-82, 2013	121	2013
Strong association between mRNA folding strength and protein abundance in S. cerevisiae H Zur, T Tuller EMBO reports 13 (3), 272-277, 2012	112	2012
New universal rules of eukaryotic translation initiation fidelity H Zur, T Tuller PLoS computational biology 9 (7), e1003136, 2013	110	2013
Association between translation efficiency and horizontal gene transfer within microbial communities T Tuller, Y Girshovich, Y Sella, A Kreimer, S Freilich, M Kupiec, U Gophna, ... Nucleic acids research 39 (11), 4743-4755, 2011	110	2011
Inferring phylogenetic networks by the maximum parsimony criterion: a case study G Jin, L Nakhleh, S Snir, T Tuller Molecular Biology and Evolution 24 (1), 324-337, 2007	100	2007
Maximum likelihood of evolutionary trees is hard B Chor, T Tuller Annual International Conference on Research in Computational Molecular …, 2005	99	2005
Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages YY Waldman, T Tuller, T Shlomi, R Sharan, E Ruppin Nucleic acids research 38 (9), 2964-2974, 2010	93	2010

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