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Atul J. Butte
Atul J. Butte
Director, Bakar Computational Health Sciences Institute, University of California, San Francisco
Verified email at ucsf.edu - Homepage
Title
Cited by
Cited by
Year
Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1
ME Patti, AJ Butte, S Crunkhorn, K Cusi, R Berria, S Kashyap, Y Miyazaki, ...
Proceedings of the national academy of sciences 100 (14), 8466-8471, 2003
23032003
xCell: digitally portraying the tissue cellular heterogeneity landscape
D Aran, Z Hu, AJ Butte
Genome biology 18, 1-14, 2017
21982017
The repertoire of mutational signatures in human cancer
LB Alexandrov, J Kim, NJ Haradhvala, MN Huang, AW Tian Ng, Y Wu, ...
Nature 578 (7793), 94-101, 2020
18322020
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
D Aran, AP Looney, L Liu, E Wu, V Fong, A Hsu, S Chak, RP Naikawadi, ...
Nature immunology 20 (2), 163-172, 2019
17302019
Scalable and accurate deep learning with electronic health records
A Rajkomar, E Oren, K Chen, AM Dai, N Hajaj, M Hardt, PJ Liu, X Liu, ...
NPJ digital medicine 1 (1), 18, 2018
16392018
Ten years of pathway analysis: current approaches and outstanding challenges
P Khatri, M Sirota, AJ Butte
PLoS computational biology 8 (2), e1002375, 2012
16122012
Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements
AJ Butte, IS Kohane
Biocomputing 2000, 418-429, 1999
13571999
Personal omics profiling reveals dynamic molecular and medical phenotypes
R Chen, GI Mias, J Li-Pook-Than, L Jiang, HYK Lam, R Chen, E Miriami, ...
Cell 148 (6), 1293-1307, 2012
13032012
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
11542020
ClinGen--the Clinical Genome Resource
WMS Rehm HL, Berg JS, Brooks LD, Bustamante CD, Evans JP, Landrum MJ ...
New England Journal of Medicine 372 (23), 2235-42, 2015
9802015
Variation in the human immune system is largely driven by non-heritable influences
P Brodin, V Jojic, T Gao, S Bhattacharya, CJL Angel, D Furman, ...
Cell 160 (1-2), 37-47, 2015
9282015
Systematic pan-cancer analysis of tumour purity
D Aran, M Sirota, AJ Butte
Nature communications 6 (1), 8971, 2015
8952015
Discovery and preclinical validation of drug indications using compendia of public gene expression data
M Sirota, JT Dudley, J Kim, AP Chiang, AA Morgan, A Sweet-Cordero, ...
Science translational medicine 3 (96), 96ra77-96ra77, 2011
8092011
Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
AJ Butte, P Tamayo, D Slonim, TR Golub, IS Kohane
Proceedings of the National Academy of Sciences 97 (22), 12182-12186, 2000
7802000
Clinical assessment incorporating a personal genome
EA Ashley, AJ Butte, MT Wheeler, R Chen, TE Klein, FE Dewey, ...
The Lancet 375 (9725), 1525-1535, 2010
7672010
The use and analysis of microarray data
A Butte
Nature reviews drug discovery 1 (12), 951-960, 2002
7022002
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
6772020
Analysis of matched mRNA measurements from two different microarray technologies
WP Kuo, TK Jenssen, AJ Butte, L Ohno-Machado, IS Kohane
Bioinformatics 18 (3), 405-412, 2002
6082002
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
JT Dudley, M Sirota, M Shenoy, RK Pai, S Roedder, AP Chiang, ...
Science translational medicine 3 (96), 96ra76-96ra76, 2011
5982011
FoxO3 regulates neural stem cell homeostasis
VM Renault, VA Rafalski, AA Morgan, DAM Salih, JO Brett, AE Webb, ...
Cell stem cell 5 (5), 527-539, 2009
5902009
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