| Nanoscale imaging of RNA with expansion microscopy F Chen, AT Wassie, AJ Cote, A Sinha, S Alon, S Asano, ER Daugharthy, ... Nature methods 13 (8), 679-684, 2016 | 409 | 2016 |
| Mitotic transcription and waves of gene reactivation during mitotic exit KC Palozola, G Donahue, H Liu, GR Grant, JS Becker, A Cote, H Yu, ... Science 358 (6359), 119-122, 2017 | 245 | 2017 |
| ClampFISH detects individual nucleic acid molecules using click chemistry–based amplification SH Rouhanifard, IA Mellis, M Dunagin, S Bayatpour, CL Jiang, I Dardani, ... Nature biotechnology 37 (1), 84-89, 2019 | 133 | 2019 |
| p53 mediates target gene association with nuclear speckles for amplified RNA expression KA Alexander, A Coté, SC Nguyen, L Zhang, O Gholamalamdari, ... Molecular cell 81 (8), 1666-1681. e6, 2021 | 73 | 2021 |
| Genetic variation in type 1 diabetes reconfigures the 3D chromatin organization of T cells and alters gene expression M Fasolino, N Goldman, W Wang, B Cattau, Y Zhou, J Petrovic, VM Link, ... Immunity 52 (2), 257-274. e11, 2020 | 50 | 2020 |
| Single-cell differences in matrix gene expression do not predict matrix deposition AJ Cote, CM McLeod, MJ Farrell, PD McClanahan, MC Dunagin, A Raj, ... Nature communications 7 (1), 10865, 2016 | 49 | 2016 |
| Cell type determination for cardiac differentiation occurs soon after seeding of human-induced pluripotent stem cells CL Jiang, Y Goyal, N Jain, Q Wang, RE Truitt, AJ Coté, B Emert, IA Mellis, ... Genome biology 23 (1), 90, 2022 | 27 | 2022 |
| pre-mRNA spatial distributions suggest that splicing can occur post-transcriptionally A Coté, C Coté, S Bayatpour, HL Drexler, KA Alexander, F Chen, ... | 26* | 2020 |
| Gene regulation gravitates toward either addition or multiplication when combining the effects of two signals EM Sanford, BL Emert, A Coté, A Raj Elife 9, e59388, 2020 | 16 | 2020 |
| CTCF blocks antisense transcription initiation at divergent promoters J Luan, MW Vermunt, CM Syrett, A Coté, JM Tome, H Zhang, A Huang, ... Nature structural & molecular biology 29 (11), 1136-1144, 2022 | 14 | 2022 |
| Exponential fluorescent amplification of individual RNAs using clampFISH probes SH Rouhanifard, IA Mellis, M Dunagin, S Bayatpour, O Symmons, A Cote, ... bioRxiv, 222794, 2017 | 9 | 2017 |
| CTCF blocks anti-sense transcription initiation at divergent gene promoters J Luan, CM Syrett, MW Vermunt, A Coté, JM Tome, H Zhang, A Huang, ... BioRxiv, 2021.10. 30.465508, 2021 | 7 | 2021 |
| Post-transcriptional splicing can occur in a slow-moving zone around the gene A Coté, A O'Farrell, I Dardani, M Dunagin, C Coté, Y Wan, S Bayatpour, ... elife 12, RP91357, 2024 | 6 | 2024 |
| Correction: Amendments: Author Correction: ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification. SH Rouhanifard, IA Mellis, M Dunagin, S Bayatpour, CL Jiang, I Dardani, ... Nature Biotechnology 37 (1), 102-103, 2019 | 6 | 2019 |
| Cell-to-Cell Heterogeneity in Transcription and Splicing AJ Cote University of Pennsylvania, 2020 | | 2020 |
| ClampFISH SH Rouhanifard, IA Mellis, M Dunagin, S Bayatpour, O Symmons, A Cote, ... | | 2018 |
| ExFISH-Cultured Cells F Chen, AT Wassie, AJ Cote, A Sinha, S Alon, S Asano, ER Daugharthy, ... | | 2018 |
| ExFISH-Tissue Slice F Chen, AT Wassie, AJ Cote, A Sinha, S Alon, S Asano, ER Daugharthy, ... | | 2018 |
| ExFISH Protocols For Cells and Tissues F Chen, AT Wassie, AJ Cote, A Sinha, S Alon, S Asano, ER Daugharthy, ... | | 2018 |
| FISHing Out the Details of CRISPR Genome Tracks AJ Coté, A Raj Biophysical Journal 112 (6), 1045-1046, 2017 | | 2017 |
