| The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans J Brunquell, S Morris, Y Lu, F Cheng, SD Westerheide BMC genomics 17, 1-18, 2016 | 160 | 2016 |
| Toward the human cellular microRNAome MN McCall, MS Kim, M Adil, AH Patil, Y Lu, CJ Mitchell, P Leal-Rojas, ... Genome research 27 (10), 1769-1781, 2017 | 150 | 2017 |
| miRge 2.0 for comprehensive analysis of microRNA sequencing data Y Lu, AS Baras, MK Halushka BMC bioinformatics 19, 1-12, 2018 | 70 | 2018 |
| Novel Bayesian classification models for predicting compounds blocking hERG potassium channels L Liu, J Lu, Y Lu, M Zheng, X Luo, W Zhu, H Jiang, K Chen Acta Pharmacologica Sinica 35 (8), 1093-1102, 2014 | 57 | 2014 |
| Characterization of the mechanism of drug-drug interactions from PubMed using MeSH terms Y Lu, B Figler, H Huang, YC Tu, J Wang, F Cheng PLoS One 12 (4), e0173548, 2017 | 36 | 2017 |
| Human and cow have identical miR-21-5p and miR-30a-5p sequences, which are likely unsuited to study dietary uptake from cow milk B Fromm, JP Tosar, Y Lu, MK Halushka, KW Witwer The Journal of Nutrition 148 (9), 1506-1507, 2018 | 33 | 2018 |
| A novel algorithm for analyzing drug-drug interactions from MEDLINE literature. Y Lu, D Shen, M Pietsch, C Nagar, Z Fadli, H Huang, YC Tu, F Cheng Scientific reports 5, 17357-17357, 2015 | 31 | 2015 |
| Identification of 15d-PGJ2 as an antagonist of farnesoid X receptor: molecular modeling with biological evaluation X Xu, Y Lu, L Chen, J Chen, X Luo, X Shen Steroids 78 (9), 813-822, 2013 | 27 | 2013 |
| Mycobacterium tuberculosis Infection Drives Mitochondria-Biased Dysregulation of Host Transfer RNA–Derived Fragments MM Looney, Y Lu, PC Karakousis, MK Halushka The Journal of Infectious Diseases 223 (10), 1796-1805, 2021 | 11 | 2021 |
| Prediction of drug indications based on chemical interactions and chemical similarities G Huang, Y Lu, C Lu, M Zheng, YD Cai Biomed Res Int, 584546-6, 2015 | 10 | 2015 |
| Predicting network of drug–enzyme interaction based on machine learning method B Niu, Y Zhang, J Ding, Y Lu, M Wang, W Lu, X Yuan, J Yin Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (1), 214-223, 2014 | 10 | 2014 |
| Prediction of Enzyme’s family based on protein-protein interaction network B Niu, Y Lu, J Lu, F Chen, T Zhao, Z Liu, T Huang, Y Zhang Current Bioinformatics 10 (1), 16-21, 2015 | 9 | 2015 |
| Predicting hepatotoxicity of drug metabolites via an ensemble approach based on support vector machine Y Lu, L Liu, D Lu, Y Cai, M Zheng, X Luo, H Jiang, K Chen Combinatorial Chemistry & High Throughput Screening 20 (10), 839-849, 2017 | 6 | 2017 |
| TIBS: a web database to browse gene expression in irritable bowel syndrome J Yan, Y Xu, B Hu, S Alnajm, L Liu, Y Lu, Z Sun, F Cheng Journal of Theoretical Biology 354, 48-53, 2014 | 6 | 2014 |
| CuDDI: A CUDA-based application for extracting drug-drug interaction related substance terms from PubMed literature Y Lu, ACV Ramachandra, M Pham, YC Tu, F Cheng Molecules 24 (6), 1081, 2019 | 4 | 2019 |
| SEGEL: a web server for visualization of smoking effects on human lung gene expression Y Xu, B Hu, SS Alnajm, Y Lu, Y Huang, D Allen-Gipson, F Cheng Plos one 10 (5), e0128326, 2015 | 3 | 2015 |
