Charles Girardot, PhD
Charles Girardot, PhD
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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ...
Nature genetics 44 (2), 148-156, 2012
Combinatorial binding predicts spatio-temporal cis-regulatory activity
RP Zinzen, C Girardot, J Gagneur, M Braun, EEM Furlong
Nature 462 (7269), 65-70, 2009
A core transcriptional network for early mesoderm development in Drosophila melanogaster
T Sandmann, C Girardot, M Brehme, W Tongprasit, V Stolc, EEM Furlong
Genes & development 21 (4), 436-449, 2007
A transcription factor collective defines cardiac cell fate and reflects lineage history
G Junion, M Spivakov, C Girardot, M Braun, EH Gustafson, E Birney, ...
Cell 148 (3), 473-486, 2012
Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila
K Oktaba, L Gutiérrez, J Gagneur, C Girardot, AK Sengupta, EEM Furlong, ...
Developmental cell 15 (6), 877-889, 2008
Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers
C Girardot, J Scholtalbers, S Sauer, SY Su, EEM Furlong
BMC bioinformatics 17, 1-6, 2016
Model-based method for transcription factor target identification with limited data
A Honkela, C Girardot, EH Gustafson, YH Liu, EEM Furlong, ...
Proceedings of the National Academy of Sciences 107 (17), 7793-7798, 2010
Analysis of variation at transcription factor binding sites in Drosophila and humans
M Spivakov, J Akhtar, P Kheradpour, K Beal, C Girardot, G Koscielny, ...
Genome biology 13, 1-15, 2012
Expanding the circuitry of pluripotency by selective isolation of chromatin-associated proteins
MR Rafiee, C Girardot, G Sigismondo, J Krijgsveld
Molecular cell 64 (3), 624-635, 2016
A conserved role for Snail as a potentiator of active transcription
M Rembold, L Ciglar, JO Yáñez-Cuna, RP Zinzen, C Girardot, A Jain, ...
Genes & development 28 (2), 167-181, 2014
Elucidation of an archaeal replication protein network to generate enhanced PCR enzymes
M Motz, I Kober, C Girardot, E Loeser, U Bauer, M Albers, G Moeckel, ...
Journal of Biological Chemistry 277 (18), 16179-16188, 2002
Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition
E Deliu, N Arecco, J Morandell, CP Dotter, X Contreras, C Girardot, ...
Nature Neuroscience 21 (12), 1717-1727, 2018
Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements
J Erceg, T Pakozdi, R Marco-Ferreres, Y Ghavi-Helm, C Girardot, ...
Genes & development 31 (6), 590-602, 2017
Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity
J Erceg, TE Saunders, C Girardot, DP Devos, L Hufnagel, EEM Furlong
PLoS genetics 10 (1), e1004060, 2014
Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity
P Khoueiry, C Girardot, L Ciglar, PC Peng, EH Gustafson, S Sinha, ...
Elife 6, e28440, 2017
4D Xpress : a database for cross-species expression pattern comparisons
Y Haudry, H Berube, I Letunic, PD Weeber, J Gagneur, C Girardot, ...
Nucleic acids research 36 (suppl_1), D847-D853, 2007
Lineage-resolved enhancer and promoter usage during a time course of embryogenesis
JP Reddington, DA Garfield, OM Sigalova, AK Calviello, ...
Developmental cell 55 (5), 648-664. e9, 2020
Opbp is a new architectural/insulator protein required for ribosomal gene expression
N Zolotarev, O Maksimenko, O Kyrchanova, E Sokolinskaya, I Osadchiy, ...
Nucleic acids research 45 (21), 12285-12300, 2017
Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis
L Ciglar, C Girardot, B Wilczyński, M Braun, EEM Furlong
Development 141 (13), 2633-2643, 2014
The Role of Chromatin Accessibility in cis-Regulatory Evolution
PC Peng, P Khoueiry, C Girardot, JP Reddington, DA Garfield, ...
Genome biology and evolution 11 (7), 1813-1828, 2019
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