| Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer I Joanito, P Wirapati, N Zhao, Z Nawaz, G Yeo, F Lee, CLP Eng, ... Nature genetics 54 (7), 963-975, 2022 | 133 | 2022 |
| LWD–TCP complex activates the morning gene CCA1 in Arabidopsis JF Wu, HL Tsai, I Joanito, YC Wu, CW Chang, YH Li, Y Wang, JC Hong, ... Nature communications 7 (1), 13181, 2016 | 133 | 2016 |
| DUBStepR is a scalable correlation-based feature selection method for accurately clustering single-cell data B Ranjan, W Sun, J Park, K Mishra, F Schmidt, R Xie, F Alipour, V Singhal, ... Nature Communications 12 (1), 5849, 2021 | 39 | 2021 |
| Artificial neural networks for predicting charge transfer coupling CI Wang, I Joanito, CF Lan, CP Hsu The Journal of Chemical Physics 153 (21), 2020 | 39 | 2020 |
| Use of REP- and ERIC-PCR to reveal genetic heterogeneity of Vibrio cholerae from edible ice in Jakarta, Indonesia DE Waturangi, I Joanito, Y Yogi, S Thomas Gut Pathogens 4, 1-9, 2012 | 37 | 2012 |
| An incoherent feed-forward loop switches the Arabidopsis clock rapidly between two hysteretic states I Joanito, JW Chu, SH Wu, CP Hsu Scientific reports 8 (1), 13944, 2018 | 31 | 2018 |
| LWD-TCP complex activates the morning gene CCA1 in JF Wu, HL Tsai, I Joanito, YC Wu, CW Chang, YH Li, Y Wang, JC Hong, ... Arabidopsis, 2016 | 15 | 2016 |
| RCA2: a scalable supervised clustering algorithm that reduces batch effects in scRNA-seq data F Schmidt, B Ranjan, QXX Lin, V Krishnan, I Joanito, MA Honardoost, ... Nucleic Acids Research 49 (15), 8505-8519, 2021 | 9 | 2021 |
| Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer., 2022, 54 I Joanito, P Wirapati, N Zhao, Z Nawaz, G Yeo, F Lee, CLP Eng, ... DOI: https://doi. org/10.1038/s41588-022-01100-4, 963-975, 0 | 6 | |
| DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data B Ranjan, W Sun, J Park, K Mishra, R Xie, F Alipour, V Singhal, F Schmidt, ... bioRxiv, 2020.10. 07.330563, 2020 | 5 | 2020 |
| LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun 7: 13181 JF Wu, HL Tsai, I Joanito, YC Wu, CW Chang, YH Li, Y Wang, JC Hong, ... | 5 | 2016 |
| Basal leakage in oscillation: Coupled transcriptional and translational control using feed-forward loops I Joanito, CCS Yan, JW Chu, SH Wu, CP Hsu PLOS Computational Biology 16 (9), e1007740, 2020 | 3 | 2020 |
| Robust clustering and interpretation of scRNA-seq data using reference component analysis F Schmidt, B Ranjan, QXX Lin, V Krishnan, I Joanito, MA Honardoost, ... bioRxiv, 2021.02. 16.431527, 2021 | 1 | 2021 |
| Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetes MA Honardoost, A Adinatha, F Schmidt, B Ranjan, M Ghaeidamini, ... Genome Medicine 16 (1), 45, 2024 | | 2024 |
| LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. WJF Wu JingFen, THL Tsai HuangLung, I Joanito, WYC Wu YiChen, ... | | 2016 |
