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R. Gonzalo Parra
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Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics
RG Parra, NP Schafer, LG Radusky, MY Tsai, AB Guzovsky, PG Wolynes, ...
Nucleic acids research 44 (W1), W356-W360, 2016
1992016
Protein frustratometer: a tool to localize energetic frustration in protein molecules
M Jenik, RG Parra, LG Radusky, A Turjanski, PG Wolynes, DU Ferreiro
Nucleic acids research 40 (W1), W348-W351, 2012
1682012
RepeatsDB: a database of tandem repeat protein structures
T Di Domenico, E Potenza, I Walsh, R Gonzalo Parra, M Giollo, ...
Nucleic acids research 42 (D1), D352-D357, 2014
682014
Structural and energetic characterization of the ankyrin repeat protein family
RG Parra, R Espada, N Verstraete, DU Ferreiro
PLoS computational biology 11 (12), e1004659, 2015
582015
Local frustration around enzyme active sites
MI Freiberger, AB Guzovsky, PG Wolynes, RG Parra*, DU Ferreiro*
Proceedings of the National Academy of Sciences 116 (10), 4037-4043 …, 2019
532019
PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes
N Papadopoulos, RG Parra, J Söding
Bioinformatics 35 (18), 3517-3519, 2019
482019
Detecting repetitions and periodicities in proteins by tiling the structural space
RG Parra, R Espada, IE Sánchez, MJ Sippl, DU Ferreiro
The Journal of Physical Chemistry B 117 (42), 12887-12897, 2013
372013
PDBe-KB: collaboratively defining the biological context of structural data
Nucleic acids research 50 (D1), D534-D542, 2022
322022
Reconstructing complex lineage trees from scRNA-seq data using MERLoT
RG Parra*, N Papadopoulos, L Ahumada-Arranz, J El Kholtei, ...
Nucleic Acids Research, gkz706, 261768 (* corresponding authors), 2019
322019
FrustratometeR: an R-package to compute Local frustration in protein structures, point mutants and MD simulations
AO Rausch, MI Freiberger, CO Leonetti, DM Luna, LG Radusky, ...
Bioinformatics, btab176, 2021
292021
Highlights from the 1st ISCB Latin American Student Council Symposium 2014
RG Parra, FL Simonetti, M Hasenahuer, G Olguin-Orellana, S Avinash K
BMC bioinformatics 16 (3), A1, 2015
28*2015
Capturing coevolutionary signals in repeat proteins
R Espada, RG Parra, T Mora, AM Walczak, DU Ferreiro
BMC Bioinformatics 16, 207, 2015
272015
Repeat Proteins challenge the concept of structural domains
R Espada*, RG Parra*, MJ Sippl, T Mora, AM Walczak, DU Ferreiro, ...
Biochemical Society Transactions 43 (5), 844-849, 2015
262015
The upside of failure: how regional student groups learn from their mistakes
T Mishra, RG Parra, T Abeel
PLoS Computational Biology 10 (8), e1003768, 2014
232014
INSECT: IN-silico SEarch for Co-occurring Transcription factors
CO Rohr*, RG Parra*, P Yankilevich, C Perez-Castro, ...
Bioinformatics 29 (22), 2852-2858, 2013
192013
Impacts of biomedical hashtag-based Twitter campaign:# DHPSP utilization for promotion of open innovation in digital health, patient safety, and personalized medicine
M Kletecka-Pulker, H Mondal, D Wang, RG Parra, AY Maigoro, S Lee, ...
Current Research in Biotechnology 3, 146-153, 2021
182021
Reflections on a journey: a retrospective of the ISCB Student Council symposium series
M Hassan, AA Namasivayam, D DeBlasio, N Fatima, B Siranosian, ...
BMC bioinformatics 19, 1-8, 2018
172018
INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction
RG Parra*, CO Rohr*, D Koile, C Perez-Castro, P Yankilevich, ...
Bioinformatics, btv726, 2015
162015
Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers
S Shome, RG Parra, N Fatima, AM Monzon, B Cuypers, Y Moosa, ...
F1000Research 8, 2019
122019
4th ISCB Latin American Student Council Symposium: a virtual and inclusive experience during COVID-19 times
C Castillo-Vilcahuaman, C Valdivia, C Osorio-Mogollón, C Silva-Andrade, ...
F1000Research 9, 2020
102020
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