Matthew Pocock

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Anil WipatProfessor of Bioinformatics Newcastle UniversityVerified email at ncl.ac.uk
Goksel MisirliSenior Lecturer, Keele UniversityVerified email at keele.ac.uk
Jacob BealRaytheon BBNVerified email at bbn.com
Phillip LordLecturer in Computing Science, Newcastle UniversityVerified email at newcastle.ac.uk
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
Carole GobleProfessor of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Robert StevensProfessor of Computer Science, Department of Computer Science, university of manchesterVerified email at manchester.ac.uk
Duncan HullSenior Lecturer (Associate Professor), Department of Computer Science, University of Manchester, UKVerified email at manchester.ac.uk
Jason E StajichProfessor, University of California, RiversideVerified email at ucr.edu
Hilmar LappDirector of Informatics, Center for Genomic and Computational Biology, Duke UniversityVerified email at duke.edu
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
John H GennariBiomedical & Health Informatics, University of WashingtonVerified email at uw.edu
Chris WroeHealth Informatician, BMJ GroupVerified email at bmjgroup.com
Lincoln SteinDirector of Informatics and Biocomputing, Ontario Institute for Cancer Research Verified email at oicr.on.ca
Mark D WilkinsonIsaac Peral Distinguished Researcher, UPMVerified email at upm.es
Christopher J MungallLawrence Berkeley National LaboratoryVerified email at lbl.gov
Guy-Bart StanProfessor of BioSystems Engineering and Control, RAEng Chair, Bioengineering, Imperial CollegeVerified email at imperial.ac.uk
Raik GrünbergKAUSTVerified email at kaust.edu.sa
Allyson L. ListerUniversity of Oxford, Oxford e-Research CentreVerified email at oerc.ox.ac.uk
Michal GaldzickiSenior Fellow, University of WashingtonVerified email at uw.edu

Matthew Pocock

Computing Science, Newcastle University

Verified email at ncl.ac.uk

bioinformatics semantic web synthetic biology


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Taverna: a tool for the composition and enactment of bioinformatics workflows T Oinn, M Addis, J Ferris, D Marvin, M Senger, M Greenwood, T Carver, ... Bioinformatics 20 (17), 3045-3054, 2004	2043	2004
The Ensembl genome database project T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, ... Nucleic acids research 30 (1), 38-41, 2002	1998	2002
The Bioperl toolkit: Perl modules for the life sciences JE Stajich, D Block, K Boulez, SE Brenner, SA Chervitz, C Dagdigian, ... Genome research 12 (10), 1611-1618, 2002	1987	2002
Taverna: a tool for building and running workflows of services D Hull, K Wolstencroft, R Stevens, C Goble, MR Pocock, P Li, T Oinn Nucleic acids research 34 (suppl_2), W729-W732, 2006	1330	2006
Taverna: lessons in creating a workflow environment for the life sciences T Oinn, M Greenwood, M Addis, MN Alpdemir, J Ferris, K Glover, C Goble, ... Concurrency and computation: Practice and experience 18 (10), 1067-1100, 2006	1023	2006
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011	344	2011
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ... Nature biotechnology 32 (6), 545-550, 2014	332	2014
BioJava: an open-source framework for bioinformatics RCG Holland, TA Down, M Pocock, A Prlić, D Huen, K James, S Foisy, ... Bioinformatics 24 (18), 2096-2097, 2008	304	2008
Sharing structure and function in biological design with SBOL 2.0 N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ... ACS synthetic biology 5 (6), 498-506, 2016	100	2016
SBOL visual: a graphical language for genetic designs JY Quinn, RS Cox III, A Adler, J Beal, S Bhatia, Y Cai, J Chen, K Clancy, ... PLoS biology 13 (12), e1002310, 2015	98	2015
Synthetic biology open language (SBOL) version 2.0. 0 B Bartley, J Beal, K Clancy, G Misirli, N Roehner, E Oberortner, M Pocock, ... Journal of integrative bioinformatics 12 (2), 902-991, 2015	75	2015
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data P Li, JI Castrillo, G Velarde, I Wassink, S Soiland-Reyes, S Owen, ... BMC bioinformatics 9, 1-11, 2008	57	2008
Synthetic biology open language (SBOL) version 2.2. 0 RS Cox III, C Madsen, JA McLaughlin, T Nguyen, N Roehner, B Bartley, ... Journal of integrative bioinformatics 15 (1), 20180001, 2018	56	2018
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... Journal of biomedical semantics 1, 1-19, 2010	55	2010
BioJava: open source components for bioinformatics M Pocock, T Down, T Hubbard ACM Sigbio Newsletter 20 (2), 10-12, 2000	52	2000
An integrated dataset for in silico drug discovery SJ Cockell, J Weile, P Lord, C Wipat, D Andriychenko, M Pocock, ... Journal of integrative bioinformatics 7 (3), 15-27, 2010	49	2010
The differential gene expression profiles of proximal and distal muscle groups are altered in pre-pathological dysferlin-deficient mice M von der Hagen, SH Laval, LM Cree, F Haldane, M Pocock, I Wappler, ... Neuromuscular Disorders 15 (12), 863-877, 2005	47	2005
Communicating structure and function in synthetic biology diagrams J Beal, T Nguyen, TE Gorochowski, A Goni-Moreno, J Scott-Brown, ... ACS synthetic biology 8 (8), 1818-1825, 2019	38	2019
Data integration and mining for synthetic biology design G Mısırlı, J Hallinan, M Pocock, P Lord, JA McLaughlin, H Sauro, A Wipat ACS synthetic biology 5 (10), 1086-1097, 2016	38	2016
Synthetic biology open language (SBOL) version 1.1. 0 M Galdzicki, M Wilson, CA Rodriguez, MR Pocock, E Oberortner, L Adam, ...	38	2012

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