Ivan Liachko
Ivan Liachko
Phase Genomics, Inc.
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Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ...
Nature genetics 49 (4), 643-650, 2017
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
RD Stewart, MD Auffret, A Warr, AH Wiser, MO Press, KW Langford, ...
Nature communications 9 (1), 870, 2018
A viable allele of Mcm4 causes chromosome instability and mammary adenocarcinomas in mice
N Shima, A Alcaraz, I Liachko, TR Buske, CA Andrews, RJ Munroe, ...
Nature genetics 39 (1), 93-98, 2007
Linking the resistome and plasmidome to the microbiome
T Stalder, MO Press, S Sullivan, I Liachko, EM Top
The ISME journal 13 (10), 2437-2446, 2019
Species-level deconvolution of metagenome assemblies with Hi-C–based contact probability maps
JN Burton, I Liachko, MJ Dunham, J Shendure
G3: Genes, Genomes, Genetics 4 (7), 1339-1346, 2014
The Fitness Consequences of Aneuploidy Are Driven by Condition-Dependent Gene Effects
AB Sunshine, C Payen, GT Ong, I Liachko, KM Tan, MJ Dunham
PLoS Biology 13 (5), e1002155, 2015
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
V Peona, MPK Blom, L Xu, R Burri, S Sullivan, I Bunikis, I Liachko, ...
Molecular ecology resources 21 (1), 263-286, 2021
Degradation of recalcitrant polyurethane and xenobiotic additives by a selected landfill microbial community and its biodegradative potential revealed by proximity ligation …
I Gaytán, A Sánchez-Reyes, M Burelo, M Vargas-Suárez, I Liachko, ...
Frontiers in microbiology 10, 2986, 2020
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ...
Nature biotechnology 40 (5), 711-719, 2022
An underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis
S Million-Weaver, AN Samadpour, DA Moreno-Habel, P Nugent, ...
Proceedings of the National Academy of Sciences 112 (10), E1096-E1105, 2015
Evolution of protein phosphorylation across 18 fungal species
RA Studer, RA Rodriguez-Mias, KM Haas, JI Hsu, C Viéitez, C Solé, ...
Science 354 (6309), 229-232, 2016
A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome
R VanBuren, CM Wai, M Colle, J Wang, S Sullivan, JM Bushakra, ...
Gigascience 7 (8), giy094, 2018
Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae
DJ Winter, ARD Ganley, CA Young, I Liachko, CL Schardl, PY Dupont, ...
PLoS Genetics 14 (10), e1007467, 2018
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
DM Bickhart, M Watson, S Koren, K Panke-Buisse, LM Cersosimo, ...
Genome biology 20 (1), 1-18, 2019
Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions
MO Press, AH Wiser, ZN Kronenberg, KW Langford, M Shakya, CC Lo, ...
biorxiv, 198713, 2017
An autonomously replicating sequence for use in a wide range of budding yeasts
I Liachko, MJ Dunham
FEMS yeast research 14 (2), 364-367, 2014
Improvement of the threespine stickleback genome using a Hi-C-based proximity-guided assembly
CL Peichel, ST Sullivan, I Liachko, MA White
Journal of Heredity 108 (6), 693-700, 2017
Accurate identification of centromere locations in yeast genomes using Hi-C
N Varoquaux, I Liachko, F Ay, JN Burton, J Shendure, MJ Dunham, ...
Nucleic acids research 43 (11), 5331-5339, 2015
The dynamic three-dimensional organization of the diploid yeast genome
S Kim, I Liachko, DG Brickner, K Cook, WS Noble, JH Brickner, ...
Elife 6, e23623, 2017
High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast
I Liachko, RA Youngblood, U Keich, MJ Dunham
Genome research 23 (4), 698-704, 2013
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