| Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ... Nature genetics 49 (4), 643-650, 2017 | 542 | 2017 |
| Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen RD Stewart, MD Auffret, A Warr, AH Wiser, MO Press, KW Langford, ... Nature communications 9 (1), 870, 2018 | 434 | 2018 |
| A viable allele of Mcm4 causes chromosome instability and mammary adenocarcinomas in mice N Shima, A Alcaraz, I Liachko, TR Buske, CA Andrews, RJ Munroe, ... Nature genetics 39 (1), 93-98, 2007 | 342 | 2007 |
| Linking the resistome and plasmidome to the microbiome T Stalder, MO Press, S Sullivan, I Liachko, EM Top The ISME journal 13 (10), 2437-2446, 2019 | 194 | 2019 |
| Species-level deconvolution of metagenome assemblies with Hi-C–based contact probability maps JN Burton, I Liachko, MJ Dunham, J Shendure G3: Genes, Genomes, Genetics 4 (7), 1339-1346, 2014 | 193 | 2014 |
| The Fitness Consequences of Aneuploidy Are Driven by Condition-Dependent Gene Effects AB Sunshine, C Payen, GT Ong, I Liachko, KM Tan, MJ Dunham PLoS Biology 13 (5), e1002155, 2015 | 103 | 2015 |
| Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise V Peona, MPK Blom, L Xu, R Burri, S Sullivan, I Bunikis, I Liachko, ... Molecular ecology resources 21 (1), 263-286, 2021 | 98 | 2021 |
| Degradation of recalcitrant polyurethane and xenobiotic additives by a selected landfill microbial community and its biodegradative potential revealed by proximity ligation … I Gaytán, A Sánchez-Reyes, M Burelo, M Vargas-Suárez, I Liachko, ... Frontiers in microbiology 10, 2986, 2020 | 93 | 2020 |
| Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ... Nature biotechnology 40 (5), 711-719, 2022 | 87 | 2022 |
| An underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis S Million-Weaver, AN Samadpour, DA Moreno-Habel, P Nugent, ... Proceedings of the National Academy of Sciences 112 (10), E1096-E1105, 2015 | 87 | 2015 |
| Evolution of protein phosphorylation across 18 fungal species RA Studer, RA Rodriguez-Mias, KM Haas, JI Hsu, C Viéitez, C Solé, ... Science 354 (6309), 229-232, 2016 | 86 | 2016 |
| A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome R VanBuren, CM Wai, M Colle, J Wang, S Sullivan, JM Bushakra, ... Gigascience 7 (8), giy094, 2018 | 82 | 2018 |
| Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae DJ Winter, ARD Ganley, CA Young, I Liachko, CL Schardl, PY Dupont, ... PLoS Genetics 14 (10), e1007467, 2018 | 78 | 2018 |
| Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation DM Bickhart, M Watson, S Koren, K Panke-Buisse, LM Cersosimo, ... Genome biology 20 (1), 1-18, 2019 | 74 | 2019 |
| Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions MO Press, AH Wiser, ZN Kronenberg, KW Langford, M Shakya, CC Lo, ... biorxiv, 198713, 2017 | 74 | 2017 |
| An autonomously replicating sequence for use in a wide range of budding yeasts I Liachko, MJ Dunham FEMS yeast research 14 (2), 364-367, 2014 | 69 | 2014 |
| Improvement of the threespine stickleback genome using a Hi-C-based proximity-guided assembly CL Peichel, ST Sullivan, I Liachko, MA White Journal of Heredity 108 (6), 693-700, 2017 | 65 | 2017 |
| Accurate identification of centromere locations in yeast genomes using Hi-C N Varoquaux, I Liachko, F Ay, JN Burton, J Shendure, MJ Dunham, ... Nucleic acids research 43 (11), 5331-5339, 2015 | 65 | 2015 |
| The dynamic three-dimensional organization of the diploid yeast genome S Kim, I Liachko, DG Brickner, K Cook, WS Noble, JH Brickner, ... Elife 6, e23623, 2017 | 61 | 2017 |
| High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast I Liachko, RA Youngblood, U Keich, MJ Dunham Genome research 23 (4), 698-704, 2013 | 61 | 2013 |
