| antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences MH Medema, K Blin, P Cimermancic, V De Jager, P Zakrzewski, ... Nucleic acids research 39 (suppl_2), W339-W346, 2011 | 2124 | 2011 |
| Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters P Cimermancic, MH Medema, J Claesen, K Kurita, LCW Brown, ... Cell 158 (2), 412-421, 2014 | 999 | 2014 |
| Global landscape of HIV–human protein complexes S Jaeger, P Cimermancic, N Gulbahce, JR Johnson, KE McGovern, ... Nature 481 (7381), 365-370, 2012 | 805 | 2012 |
| A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics MS Donia, P Cimermancic, CJ Schulze, LCW Brown, J Martin, M Mitreva, ... Cell 158 (6), 1402-1414, 2014 | 701 | 2014 |
| Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine BB Williams, AH Van Benschoten, P Cimermancic, MS Donia, ... Cell host & microbe 16 (4), 495-503, 2014 | 611 | 2014 |
| SNX27 mediates retromer tubule entry and endosome-to-plasma membrane trafficking of signalling receptors P Temkin, B Lauffer, S Jäger, P Cimermancic, NJ Krogan, M Von Zastrow Nature cell biology 13 (6), 715-721, 2011 | 526 | 2011 |
| The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes D Blazek, J Kohoutek, K Bartholomeeusen, E Johansen, P Hulinkova, ... Genes & Development 25 (20), 2158-2172, 2011 | 524 | 2011 |
| Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection S Jäger, DY Kim, JF Hultquist, K Shindo, RS LaRue, E Kwon, M Li, ... Nature 481 (7381), 371-375, 2012 | 432 | 2012 |
| A mass spectrometry–guided genome mining approach for natural product peptidogenomics RD Kersten, YL Yang, Y Xu, P Cimermancic, SJ Nam, W Fenical, ... Nature chemical biology 7 (11), 794-802, 2011 | 426 | 2011 |
| Covalent docking of large libraries for the discovery of chemical probes N London, RM Miller, JJ Irwin, O Eidam, L Gibold, R Bonnet, BK Shoichet, ... Biophysical Journal 106 (2), 264a, 2014 | 267 | 2014 |
| High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis S Tiwary, R Levy, P Gutenbrunner, F Salinas Soto, KK Palaniappan, ... Nature methods 16 (6), 519-525, 2019 | 255 | 2019 |
| Molecular architecture of the 40S⋅ eIF1⋅ eIF3 translation initiation complex JP Erzberger, F Stengel, R Pellarin, S Zhang, T Schaefer, CHS Aylett, ... Cell 158 (5), 1123-1135, 2014 | 246 | 2014 |
| A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis MH Medema, P Cimermancic, A Sali, E Takano, MA Fischbach PLoS computational biology 10 (12), e1004016, 2014 | 228 | 2014 |
| Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions JH Morris, GM Knudsen, E Verschueren, JR Johnson, P Cimermancic, ... Nature protocols 9 (11), 2539-2554, 2014 | 217 | 2014 |
| CryptoSite: expanding the druggable proteome by characterization and prediction of cryptic binding sites P Cimermancic, P Weinkam, TJ Rettenmaier, L Bichmann, DA Keedy, ... Journal of molecular biology 428 (4), 709-719, 2016 | 205 | 2016 |
| Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production S Naji, G Ambrus, P Cimermančič, JR Reyes, JR Johnson, R Filbrandt, ... Molecular & Cellular Proteomics 11 (4), M111. 015313, 2012 | 153 | 2012 |
| Molecular details underlying dynamic structures and regulation of the human 26S proteasome X Wang, P Cimermancic, C Yu, A Schweitzer, N Chopra, JL Engel, ... Molecular & Cellular Proteomics 16 (5), 840-854, 2017 | 110 | 2017 |
| Architecture of the human and yeast general transcription and DNA repair factor TFIIH J Luo, P Cimermancic, S Viswanath, CC Ebmeier, B Kim, M Dehecq, ... Molecular cell 59 (5), 794-806, 2015 | 110 | 2015 |
| IMG-ABC: a knowledge base to fuel discovery of biosynthetic gene clusters and novel secondary metabolites M Hadjithomas, IMA Chen, K Chu, A Ratner, K Palaniappan, E Szeto, ... MBio 6 (4), 10.1128/mbio. 00932-15, 2015 | 104 | 2015 |
| Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides AM Kloosterman, P Cimermancic, SS Elsayed, C Du, M Hadjithomas, ... PLoS biology 18 (12), e3001026, 2020 | 100 | 2020 |
