Katja Baerenfaller

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Jonas GrossmannSenior Proteome Informatic Expert, ETH Zurich, University of ZurichVerified email at fgcz.ethz.ch
Sonja ReilandCentre for Genomic RegulationVerified email at crg.eu
Lars HennigProfessor in Genetics, Swedish Agricultural University, UppsalaVerified email at slu.se
Ronan SulpiceLecturer, School of Biological and Chemical Sciences, University of Galway, IrelandVerified email at universityofgalway.ie
Catherine MassonnetINRAEVerified email at inrae.fr
Philip ZimmermannCEO, Nebion AGVerified email at nebion.com
Sylvain BischofDepartment of Molecular, Cell, and Developmental Biology, University of California Los Angeles, Los Angeles, California, United Verified email at ucla.edu
Katharine A HowellHDR Course Coordinator, Graduate Research, Edith Cowan UniversityVerified email at ecu.edu.au
Peter BühlmannProfessor of Statistics and Mathematics, ETH ZurichVerified email at stat.math.ethz.ch
Ian SmallARC Centre of Excellence in Plant Energy Biology, The University of Western AustraliaVerified email at uwa.edu.au
Wolfram WeckwerthProfessor, Head of Department and Vienna Metabolomics Center (VIME) at the University of ViennaVerified email at univie.ac.at
Stefanie WienkoopUniv.-Prof. Group Leader Plant-Microsymbiont Interaction, University ViennaVerified email at univie.ac.at
waltraud x schulzeVerified email at uni-hohenheim.de
Hiren J JoshiCopenhagen Center for Glycomics, University of CopenhagenVerified email at sund.ku.dk
Sandra TanzARC Discovery Early Career Researcher (DECRA), Plant Energy Biology, UWAVerified email at uwa.edu.au
klaas J. van WijkCornell University, Section of Plant Biology, SIPSVerified email at cornell.edu
Alexandra M E JonesProfessor, School of Life Sciences, University of WarwickVerified email at warwick.ac.uk
Norbert RollandCNRS, Laboratoire de Physiologie Cellulaire & Végétale, Grenoble, FranceVerified email at cea.fr
A. Harvey MillarARC Laureate Fellow | ARC Centre of Excellence in Plant Energy Biology, The University of WesternVerified email at uwa.edu.au
Joshua L. HeazlewoodUniversity of MelbourneVerified email at unimelb.edu.au

Katja Baerenfaller

Group lead Molecular Allergology

Verified email at siaf.uzh.ch

Proteomics data integration model organism proteomics databases


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics K Baerenfaller, J Grossmann, MA Grobei, R Hull, M Hirsch-Hoffmann, ... Science 320 (5878), 938-941, 2008	566	2008
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks S Reiland, G Messerli, K Baerenfaller, B Gerrits, A Endler, J Grossmann, ... Plant physiology 150 (2), 889-903, 2009	533	2009
Systems‐based analysis of Arabidopsis leaf growth reveals adaptation to water deficit K Baerenfaller, C Massonnet, S Walsh, S Baginsky, P Bühlmann, ... Molecular systems biology 8 (1), 606, 2012	234	2012
Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation J Bazin, K Baerenfaller, SJ Gosai, BD Gregory, M Crespi, J Bailey-Serres Proceedings of the National Academy of Sciences 114 (46), E10018-E10027, 2017	185	2017
Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF) S Reiland, G Finazzi, A Endler, A Willig, K Baerenfaller, J Grossmann, ... Proceedings of the National Academy of Sciences 108 (31), 12955-12960, 2011	171	2011
Global COVID-19 lockdown highlights humans as both threats and custodians of the environment AE Bates, RB Primack, BS Biggar, TJ Bird, ME Clinton, RJ Command, ... Biological conservation 263, 109175, 2021	153	2021
Advances and recent developments in asthma in 2020 L Cevhertas, I Ogulur, DJ Maurer, D Burla, M Ding, K Jansen, J Koch, ... Allergy 75 (12), 3124-3146, 2020	144	2020
Traditional and digital biomarkers: two worlds apart? LM Babrak, J Menetski, M Rebhan, G Nisato, M Zinggeler, N Brasier, ... Digital biomarkers 3 (2), 92-102, 2019	133	2019
Advances and highlights in biomarkers of allergic diseases I Ogulur, Y Pat, O Ardicli, E Barletta, L Cevhertas, ... Allergy 76 (12), 3659-3686, 2021	131	2021
5-Fluorouracil is efficiently removed from DNA by the base excision and mismatch repair systems F Fischer, K Baerenfaller, J Jiricny Gastroenterology 133 (6), 1858-1868, 2007	129	2007
Large-scale proteomics of the cassava storage root and identification of a target gene to reduce postharvest deterioration H Vanderschuren, E Nyaboga, JS Poon, K Baerenfaller, J Grossmann, ... The Plant Cell 26 (5), 1913-1924, 2014	114	2014
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data HJ Joshi, M Hirsch-Hoffmann, K Baerenfaller, W Gruissem, S Baginsky, ... Plant physiology 155 (1), 259-270, 2011	102	2011
Plastid Proteome Assembly without Toc159: Photosynthetic Protein Import and Accumulation of N-Acetylated Plastid Precursor Proteins S Bischof, K Baerenfaller, T Wildhaber, R Troesch, PA Vidi, B Roschitzki, ... The Plant Cell 23 (11), 3911-3928, 2011	96	2011
Jasmonate controls polypeptide patterning in undamaged tissue in wounded Arabidopsis leaves A Gfeller, K Baerenfaller, J Loscos, A Chételat, S Baginsky, EE Farmer Plant Physiology 156 (4), 1797-1807, 2011	86	2011
pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana K Baerenfaller, M Hirsch-Hoffmann, J Svozil, R Hull, D Russenberger, ... Integrative Biology 3 (3), 225-237, 2011	81	2011
Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism DD Seaton, A Graf, K Baerenfaller, M Stitt, AJ Millar, W Gruissem Molecular systems biology 14 (3), e7962, 2018	76	2018
A workflow to increase the detection rate of proteins from unsequenced organisms in high‐throughput proteomics experiments J Grossmann, B Fischer, K Baerenfaller, J Owiti, JM Buhmann, ... Proteomics 7 (23), 4245-4254, 2007	55	2007
Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity K Fröhlich, E Brombacher, M Fahrner, D Vogele, L Kook, N Pinter, ... Nature communications 13 (1), 2622, 2022	50	2022
Diurnal changes in the histone H3 signature H3K9ac\|H3K27ac\|H3S28p are associated with diurnal gene expression in Arabidopsis K Baerenfaller, H Shu, M Hirsch‐Hoffmann, J Fütterer, L Opitz, ... Plant, cell & environment 39 (11), 2557-2569, 2016	38	2016
pep2pro: the high-throughput proteomics data processing, analysis, and visualization tool M Hirsch-Hoffmann, W Gruissem, K Baerenfaller Frontiers in plant science 3, 123, 2012	38	2012

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