NAMD2: greater scalability for parallel molecular dynamics L Kalé, R Skeel, M Bhandarkar, R Brunner, A Gursoy, N Krawetz, ... Journal of Computational Physics 151 (1), 283-312, 1999 | 3022 | 1999 |
Principles of protein− protein interactions: what are the preferred ways for proteins to interact? O Keskin, A Gursoy, B Ma, R Nussinov Chemical reviews 108 (4), 1225-1244, 2008 | 826 | 2008 |
NAMD: a parallel, object-oriented molecular dynamics program MT Nelson, W Humphrey, A Gursoy, A Dalke, LV Kalé, RD Skeel, ... The International Journal of Supercomputer Applications and High Performance …, 1996 | 805 | 1996 |
Transient protein–protein interactions SE Acuner Ozbabacan, HB Engin, A Gursoy, O Keskin Protein Engineering, Design & Selection 24 (9), 635-648, 2011 | 371 | 2011 |
Predicting protein–protein interactions from the molecular to the proteome level O Keskin, N Tuncbag, A Gursoy Chemical reviews 116 (8), 4884-4909, 2016 | 366 | 2016 |
Ras conformational ensembles, allostery, and signaling S Lu, H Jang, S Muratcioglu, A Gursoy, O Keskin, R Nussinov, J Zhang Chemical reviews 116 (11), 6607-6665, 2016 | 336 | 2016 |
Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM N Tuncbag, A Gursoy, R Nussinov, O Keskin Nature protocols 6 (9), 1341-1354, 2011 | 326 | 2011 |
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy N Tuncbag, A Gursoy, O Keskin Bioinformatics 25 (12), 1513-1520, 2009 | 311 | 2009 |
Human cancer protein-protein interaction network: a structural perspective G Kar, A Gursoy, O Keskin PLoS computational biology 5 (12), e1000601, 2009 | 289 | 2009 |
PRISM: protein interactions by structural matching U Ogmen, O Keskin, AS Aytuna, R Nussinov, A Gursoy Nucleic acids research 33 (suppl_2), W331-W336, 2005 | 265 | 2005 |
Prediction of protein–protein interactions by combining structure and sequence conservation in protein interfaces AS Aytuna, A Gursoy, O Keskin Bioinformatics 21 (12), 2850-2855, 2005 | 260 | 2005 |
HotPoint: hot spot prediction server for protein interfaces N Tuncbag, O Keskin, A Gursoy Nucleic acids research 38 (suppl_2), W402-W406, 2010 | 237 | 2010 |
GTP-dependent K-Ras dimerization S Muratcioglu, TS Chavan, BC Freed, H Jang, L Khavrutskii, RN Freed, ... Structure 23 (7), 1325-1335, 2015 | 226 | 2015 |
PRISM: a web server and repository for prediction of protein–protein interactions and modeling their 3D complexes A Baspinar, E Cukuroglu, R Nussinov, O Keskin, A Gursoy Nucleic acids research 42 (W1), W285-W289, 2014 | 224 | 2014 |
Patika: an integrated visual environment for collaborative construction and analysis of cellular pathways E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ... Bioinformatics 18 (7), 996-1003, 2002 | 217 | 2002 |
Allostery and population shift in drug discovery G Kar, O Keskin, A Gursoy, R Nussinov Current opinion in pharmacology 10 (6), 715-722, 2010 | 211 | 2010 |
A survey of available tools and web servers for analysis of protein–protein interactions and interfaces N Tuncbag, G Kar, O Keskin, A Gursoy, R Nussinov Briefings in bioinformatics 10 (3), 217-232, 2009 | 208 | 2009 |
Hot spots in protein–protein interfaces: Towards drug discovery E Cukuroglu, HB Engin, A Gursoy, O Keskin Progress in biophysics and molecular biology 116 (2-3), 165-173, 2014 | 189 | 2014 |
Topological properties of protein interaction networks from a structural perspective A Gursoy, O Keskin, R Nussinov Biochemical Society Transactions 36 (6), 1398-1403, 2008 | 184 | 2008 |
HotSprint: database of computational hot spots in protein interfaces E Guney, N Tuncbag, O Keskin, A Gursoy Nucleic acids research 36 (suppl_1), D662-D666, 2007 | 145 | 2007 |