Attila Gursoy
Attila Gursoy
Professor of Computer Science, Koc University
Verified email at - Homepage
Cited by
Cited by
NAMD2: greater scalability for parallel molecular dynamics
L Kalé, R Skeel, M Bhandarkar, R Brunner, A Gursoy, N Krawetz, ...
Journal of Computational Physics 151 (1), 283-312, 1999
Principles of protein− protein interactions: what are the preferred ways for proteins to interact?
O Keskin, A Gursoy, B Ma, R Nussinov
Chemical reviews 108 (4), 1225-1244, 2008
NAMD: a parallel, object-oriented molecular dynamics program
MT Nelson, W Humphrey, A Gursoy, A Dalke, LV Kalé, RD Skeel, ...
The International Journal of Supercomputer Applications and High Performance …, 1996
Predicting protein–protein interactions from the molecular to the proteome level
O Keskin, N Tuncbag, A Gursoy
Chemical reviews 116 (8), 4884-4909, 2016
Transient protein–protein interactions
SE Acuner Ozbabacan, HB Engin, A Gursoy, O Keskin
Protein Engineering, Design & Selection 24 (9), 635-648, 2011
Ras conformational ensembles, allostery, and signaling
S Lu, H Jang, S Muratcioglu, A Gursoy, O Keskin, R Nussinov, J Zhang
Chemical reviews 116 (11), 6607-6665, 2016
Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
N Tuncbag, A Gursoy, R Nussinov, O Keskin
Nature protocols 6 (9), 1341-1354, 2011
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy
N Tuncbag, A Gursoy, O Keskin
Bioinformatics 25 (12), 1513-1520, 2009
Human cancer protein-protein interaction network: a structural perspective
G Kar, A Gursoy, O Keskin
PLoS computational biology 5 (12), e1000601, 2009
PRISM: protein interactions by structural matching
U Ogmen, O Keskin, AS Aytuna, R Nussinov, A Gursoy
Nucleic acids research 33 (suppl_2), W331-W336, 2005
Prediction of protein–protein interactions by combining structure and sequence conservation in protein interfaces
AS Aytuna, A Gursoy, O Keskin
Bioinformatics 21 (12), 2850-2855, 2005
HotPoint: hot spot prediction server for protein interfaces
N Tuncbag, O Keskin, A Gursoy
Nucleic acids research 38 (suppl_2), W402-W406, 2010
GTP-dependent K-Ras dimerization
S Muratcioglu, TS Chavan, BC Freed, H Jang, L Khavrutskii, RN Freed, ...
Structure 23 (7), 1325-1335, 2015
Patika: an integrated visual environment for collaborative construction and analysis of cellular pathways
E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ...
Bioinformatics 18 (7), 996-1003, 2002
PRISM: a web server and repository for prediction of protein–protein interactions and modeling their 3D complexes
A Baspinar, E Cukuroglu, R Nussinov, O Keskin, A Gursoy
Nucleic acids research 42 (W1), W285-W289, 2014
Allostery and population shift in drug discovery
G Kar, O Keskin, A Gursoy, R Nussinov
Current opinion in pharmacology 10 (6), 715-722, 2010
A survey of available tools and web servers for analysis of protein–protein interactions and interfaces
N Tuncbag, G Kar, O Keskin, A Gursoy, R Nussinov
Briefings in bioinformatics 10 (3), 217-232, 2009
Topological properties of protein interaction networks from a structural perspective
A Gursoy, O Keskin, R Nussinov
Biochemical Society Transactions 36 (6), 1398-1403, 2008
Hot spots in protein–protein interfaces: Towards drug discovery
E Cukuroglu, HB Engin, A Gursoy, O Keskin
Progress in biophysics and molecular biology 116 (2-3), 165-173, 2014
HotSprint: database of computational hot spots in protein interfaces
E Guney, N Tuncbag, O Keskin, A Gursoy
Nucleic acids research 36 (suppl_1), D662-D666, 2007
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