Robert Giegerich
Robert Giegerich
Professor for Practical Computer Science and Bioinformatics, Bielefeld University
Verified email at
Cited by
Cited by
Fast and effective prediction of microRNA/target duplexes
M Rehmsmeier, P Steffen, M Höchsmann, R Giegerich
Rna 10 (10), 1507-1517, 2004
REPuter: the manifold applications of repeat analysis on a genomic scale
S Kurtz, JV Choudhuri, E Ohlebusch, C Schleiermacher, J Stoye, ...
Nucleic acids research 29 (22), 4633-4642, 2001
GenDB—an open source genome annotation system for prokaryote genomes
F Meyer, A Goesmann, AC McHardy, D Bartels, T Bekel, J Clausen, ...
Nucleic acids research 31 (8), 2187-2195, 2003
A comprehensive comparison of comparative RNA structure prediction approaches
PP Gardner, R Giegerich
BMC bioinformatics 5, 1-18, 2004
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
J Reeder, R Giegerich
BMC bioinformatics 5, 1-12, 2004
RNAshapes: an integrated RNA analysis package based on abstract shapes
P Steffen, B Voß, M Rehmsmeier, J Reeder, R Giegerich
Bioinformatics 22 (4), 500-503, 2006
Local similarity in RNA secondary structures
M Hochsmann, T Toller, R Giegerich, S Kurtz
Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE …, 2003
Abstract shapes of RNA
R Giegerich, B Voß, M Rehmsmeier
Nucleic acids research 32 (16), 4843-4851, 2004
From Ukkonen to McCreight and Weiner: A unifying view of linear-time suffix tree construction
R Giegerich, S Kurtz
Algorithmica 19, 331-353, 1997
Analysis of RNA sequence structure maps by exhaustive enumeration. I
W Grüner, R Giegerich, D Strothmann, C Reidys, J Weber, IL Hofacker, ...
Monatshefte für Chemie 127, 355-389, 1996
GeneFisher-software support for the detection of postulated genes.
R Giegerich, F Meyer, C Schleiermacher
ISMB 4, 68-77, 1996
Pure multiple RNA secondary structure alignments: a progressive profile approach
M Hochsmann, B Voss, R Giegerich
IEEE/ACM transactions on computational biology and bioinformatics 1 (1), 53-62, 2004
Attribute coupled grammars
H Ganzinger, R Giegerich
ACM SIGPLAN Notices 19 (6), 157-170, 1984
Fast index based algorithms and software for matching position specific scoring matrices
M Beckstette, R Homann, R Giegerich, S Kurtz
BMC bioinformatics 7, 1-25, 2006
Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti1021
JP Schlüter, J Reinkensmeier, MJ Barnett, C Lang, E Krol, R Giegerich, ...
BMC genomics 14, 1-21, 2013
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows
J Reeder, P Steffen, R Giegerich
Nucleic acids research 35 (suppl_2), W320-W324, 2007
A discipline of dynamic programming over sequence data
R Giegerich, C Meyer, P Steffen
Science of Computer Programming 51 (3), 215-263, 2004
The RNA shapes studio
S Janssen, R Giegerich
Bioinformatics 31 (3), 423-425, 2015
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
JP Schlüter, J Reinkensmeier, S Daschkey, E Evguenieva-Hackenberg, ...
BMC genomics 11, 1-35, 2010
Efficient implementation of lazy suffix trees
R Giegerich, S Kurtz, J Stoye
Software: Practice and Experience 33 (11), 1035-1049, 2003
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