| CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans J Lee, DS Patel, J Ståhle, SJ Park, NR Kern, S Kim, J Lee, X Cheng, ... Journal of chemical theory and computation 15 (1), 775-786, 2018 | 394 | 2018 |
| CHARMM‐GUI 10 years for biomolecular modeling and simulation S Jo, X Cheng, J Lee, S Kim, SJ Park, DS Patel, AH Beaven, KI Lee, H Rui, ... Journal of computational chemistry 38 (15), 1114-1124, 2017 | 262 | 2017 |
| CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates SJ Park, J Lee, Y Qi, NR Kern, HS Lee, S Jo, IS Joung, K Joo, J Lee, W Im Glycobiology 29 (4), 320-331, 2019 | 241 | 2019 |
| Developing a fully glycosylated full-length SARS-CoV-2 spike protein model in a viral membrane H Woo, SJ Park, YK Choi, T Park, M Tanveer, Y Cao, NR Kern, J Lee, ... The journal of physical chemistry B 124 (33), 7128-7137, 2020 | 231 | 2020 |
| Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank SJ Park, J Lee, DS Patel, H Ma, HS Lee, S Jo, W Im Bioinformatics 33 (19), 3051-3057, 2017 | 99 | 2017 |
| CHARMM-GUI polymer builder for modeling and simulation of synthetic polymers YK Choi, SJ Park, S Park, S Kim, NR Kern, J Lee, W Im Journal of chemical theory and computation 17 (4), 2431-2443, 2021 | 74 | 2021 |
| Structure, dynamics, receptor binding, and antibody binding of the fully glycosylated full-length SARS-CoV-2 spike protein in a viral membrane YK Choi, Y Cao, M Frank, H Woo, SJ Park, MS Yeom, TI Croll, C Seok, ... Journal of Chemical Theory and Computation 17 (4), 2479-2487, 2021 | 72 | 2021 |
| Additive CHARMM36 force field for nonstandard amino acids A Croitoru, SJ Park, A Kumar, J Lee, W Im, AD MacKerell Jr, ... Journal of chemical theory and computation 17 (6), 3554-3570, 2021 | 49 | 2021 |
| CHARMM-GUI PDB manipulator: Various PDB structural modifications for biomolecular modeling and simulation SJ Park, N Kern, T Brown, J Lee, W Im Journal of Molecular Biology 435 (14), 167995, 2023 | 31 | 2023 |
| CHARMM‐GUI Drude prepper for molecular dynamics simulation using the classical Drude polarizable force field AA Kognole, J Lee, SJ Park, S Jo, P Chatterjee, JA Lemkul, J Huang, ... Journal of computational chemistry 43 (5), 359-375, 2022 | 27 | 2022 |
| Ligand-binding-site refinement to generate reliable holo protein structure conformations from apo structures H Guterres, SJ Park, W Jiang, W Im Journal of chemical information and modeling 61 (1), 535-546, 2020 | 22 | 2020 |
| Dynamic interactions of fully glycosylated SARS-CoV-2 spike protein with various antibodies Y Cao, YK Choi, M Frank, H Woo, SJ Park, MS Yeom, C Seok, W Im Journal of chemical theory and computation 17 (10), 6559-6569, 2021 | 18 | 2021 |
| GlyMDB: glycan microarray database and analysis toolset Y Cao, SJ Park, AY Mehta, RD Cummings, W Im Bioinformatics 36 (8), 2438-2442, 2020 | 17 | 2020 |
| A systematic analysis of protein–carbohydrate interactions in the Protein Data Bank Y Cao, SJ Park, W Im Glycobiology 31 (2), 126-136, 2021 | 16 | 2021 |
| CHARMM‐GUI high‐throughput simulator for efficient evaluation of protein–ligand interactions with different force fields H Guterres, SJ Park, H Zhang, T Perone, J Kim, W Im Protein Science 31 (9), e4413, 2022 | 12 | 2022 |
| GS-align for glycan structure alignment and similarity measurement HS Lee, S Jo, S Mukherjee, SJ Park, J Skolnick, J Lee, W Im Bioinformatics 31 (16), 2653-2659, 2015 | 12 | 2015 |
| CHARMM‐GUI Enhanced Sampler for various collective variables and enhanced sampling methods D Suh, S Feng, H Lee, H Zhang, SJ Park, S Kim, J Lee, S Choi, W Im Protein Science 31 (11), e4446, 2022 | 9 | 2022 |
| CHARMM-GUI LBS Finder & Refiner for Ligand Binding Site Prediction and Refinement H Guterres, SJ Park, H Zhang, W Im Journal of chemical information and modeling 61 (8), 3744-3751, 2021 | 9 | 2021 |
| CHARMM-GUI Ligand Designer for Template-Based Virtual Ligand Design in a Binding Site H Guterres, SJ Park, Y Cao, W Im Journal of chemical information and modeling 61 (11), 5336-5342, 2021 | 7 | 2021 |
| Structural modeling of cytokine-receptor-JAK2 signaling complexes using AlphaFold Multimer ID Pogozheva, S Cherepanov, SJ Park, M Raghavan, W Im, AL Lomize Journal of Chemical Information and Modeling 63 (18), 5874-5895, 2023 | 1 | 2023 |
