Darren Wilkinson

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Richard BoysProfessor of Applied Statistics, Newcastle University, UKVerified email at ncl.ac.uk
Colin S GillespieSenior Statistics Lecturer, Newcastle UniversityVerified email at newcastle.ac.uk
Tom KirkwoodNewcastle University and University of Copenhagen; University of Manchester; National Institute forVerified email at ncl.ac.uk
Andrew GolightlyDurham University, UKVerified email at durham.ac.uk
David LydallNewcastle UniversityVerified email at ncl.ac.uk
Conor LawlessNewcastle UniversityVerified email at ncl.ac.uk
Sarah KeatingUCLVerified email at ucl.ac.uk
Michael HuckaGoogle Quantum AIVerified email at google.com
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaVerified email at virginia.edu
Sven SahleUniversität HeidelbergVerified email at bioquant.uni-heidelberg.de
Carole ProctorNewcastle UniversityVerified email at ncl.ac.uk
Daryl ShanleyNewcastle UniversityVerified email at ncl.ac.uk
Thomas CurtisNewcastle UniversityVerified email at ncl.ac.uk
Lucian SmithUniversity of WashingtonVerified email at uw.edu
Anil WipatProfessor of Bioinformatics Newcastle UniversityVerified email at ncl.ac.uk
Daniel A HendersonNewcastle University, UKVerified email at ncl.ac.uk
Chris MyersUniversity of UtahVerified email at ece.utah.edu
Oluwole K. OyebamijiDeepMind Academic Fellow, University of BirminghamVerified email at bham.ac.uk
Dagmar WaltemathProfessor of Medical InformaticsVerified email at uni-greifswald.de
Andreas DrägerProfessor for Data Analytics and BioinformaticsVerified email at informatik.uni-halle.de

Darren Wilkinson

Professor of Statistics, Durham University, U.K.

Verified email at durham.ac.uk - Homepage

Bayesian inference stochastic modelling computational systems biology genomics machine learning


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Stochastic modelling for systems biology DJ Wilkinson Chapman and Hall/CRC, 2018	1537	2018
Stochastic modelling for quantitative description of heterogeneous biological systems DJ Wilkinson Nature Reviews Genetics 10 (2), 122-133, 2009	689	2009
Bayesian parameter inference for stochastic biochemical network models using particle Markov chain Monte Carlo A Golightly, DJ Wilkinson Interface focus 1 (6), 807-820, 2011	361	2011
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011	344	2011
Do simple models lead to generality in ecology? MR Evans, V Grimm, K Johst, T Knuuttila, R De Langhe, CM Lessells, ... Trends in ecology & evolution 28 (10), 578-583, 2013	340	2013
Bayesian inference for a discretely observed stochastic kinetic model RJ Boys, DJ Wilkinson, TBL Kirkwood Statistics and Computing 18, 125-135, 2008	329	2008
Bayesian methods in bioinformatics and computational systems biology DJ Wilkinson Briefings in bioinformatics 8 (2), 109-116, 2007	303	2007
A review of stochastic block models and extensions for graph clustering C Lee, DJ Wilkinson Applied Network Science 4 (1), 1-50, 2019	282	2019
Bayesian inference for nonlinear multivariate diffusion models observed with error A Golightly, DJ Wilkinson Computational Statistics & Data Analysis 52 (3), 1674-1693, 2008	275	2008
Bayesian inference for stochastic kinetic models using a diffusion approximation A Golightly, DJ Wilkinson Biometrics 61 (3), 781-788, 2005	275	2005
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020	241	2020
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies AL Mitchell, M Scheremetjew, H Denise, S Potter, A Tarkowska, ... Nucleic acids research 46 (D1), D726-D735, 2018	203	2018
MGnify: the microbiome sequence data analysis resource in 2023 L Richardson, B Allen, G Baldi, M Beracochea, ML Bileschi, T Burdett, ... Nucleic Acids Research 51 (D1), D753-D759, 2023	174	2023
The systems biology markup language (SBML): Language specification for level 3 version 1 core L Smith, D Wilkinson, M Hucka, F Bergmann, S Hoops, S Keating, S Sahle, ... Nature Precedings, 1-1, 2010	173*	2010
Bayesian sequential inference for nonlinear multivariate diffusions A Golightly, DJ Wilkinson Statistics and Computing 16, 323-338, 2006	169	2006
Bayesian sequential inference for stochastic kinetic biochemical network models A Golightly, DJ Wilkinson Journal of Computational Biology 13 (3), 838-851, 2006	142	2006
Towards an e-biology of ageing: integrating theory and data TBL Kirkwood, RJ Boys, CS Gillespie, CJ Proctor, DP Shanley, ... Nature Reviews Molecular Cell Biology 4 (3), 243-249, 2003	140	2003
Parallel bayesian computation DJ Wilkinson Statistics Textbooks and Monographs 184, 477, 2006	137	2006
Detecting homogeneous segments in DNA sequences by using hidden Markov models RJ Boys, DA Henderson, DJ Wilkinson Journal of the Royal Statistical Society: Series C (Applied Statistics) 49 …, 2000	116	2000
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2 M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ... Journal of integrative bioinformatics 16 (2), 20190021, 2019	114	2019

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