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Diego Javier Zea
Diego Javier Zea
Associate Professor, Université Paris-Saclay
Verified email at universite-paris-saclay.fr - Homepage
Title
Cited by
Cited by
Year
Impact of protein conformational diversity on AlphaFold predictions
T Saldaño, N Escobedo, J Marchetti, DJ Zea, J Mac Donagh, ...
Bioinformatics 38 (10), 2742-2748, 2022
852022
Conformational diversity analysis reveals three functional mechanisms in proteins
AM Monzon, DJ Zea, MS Fornasari, TE Saldaño, S Fernandez-Alberti, ...
PLoS computational biology 13 (2), e1005398, 2017
512017
Conformational diversity and the emergence of sequence signatures during evolution
G Parisi, DJ Zea, AM Monzon, C Marino-Buslje
Current opinion in structural biology 32, 58-65, 2015
422015
Protein conformational diversity correlates with evolutionary rate
D Javier Zea, A Miguel Monzon, MS Fornasari, C Marino-Buslje, G Parisi
Molecular biology and evolution 30 (7), 1500-1503, 2013
362013
I-COMS: Interprotein-COrrelated mutations server
J Iserte, FL Simonetti, DJ Zea, E Teppa, C Marino-Buslje
Nucleic Acids Research 43 (W1), W320-W325, 2015
312015
Protein–protein interactions leave evolutionary footprints: High molecular coevolution at the core of interfaces
E Teppa, DJ Zea, C Marino‐Buslje
Protein Science 26 (12), 2438-2444, 2017
282017
Disorder transitions and conformational diversity cooperatively modulate biological function in proteins
DJ Zea, AM Monzon, C Gonzalez, MS Fornasari, SCE Tosatto, G Parisi
Protein Science 25 (6), 1138-1146, 2016
242016
Homology modeling in a dynamical world
AM Monzon, DJ Zea, C Marino‐Buslje, G Parisi
Protein Science 26 (11), 2195-2206, 2017
222017
MIToS. jl: mutual information tools for protein sequence analysis in the Julia language
DJ Zea, D Anfossi, M Nielsen, C Marino-Buslje
Bioinformatics 33 (4), 564-565, 2017
212017
From interaction networks to interfaces, scanning intrinsically disordered regions using AlphaFold2
H Bret, J Gao, DJ Zea, J Andreani, R Guerois
Nature Communications 15 (1), 597, 2024
162024
Assessing conservation of alternative splicing with evolutionary splicing graphs
DJ Zea, S Laskina, A Baudin, H Richard, E Laine
Genome Research 31 (8), 1462-1473, 2021
152021
On the dynamical incompleteness of the Protein Data Bank
C Marino-Buslje, AM Monzon, DJ Zea, MS Fornasari, G Parisi
Briefings in bioinformatics 20 (1), 356-359, 2019
152019
How is structural divergence related to evolutionary information?
DJ Zea, AM Monzon, G Parisi, C Marino-Buslje
Molecular phylogenetics and evolution 127, 859-866, 2018
132018
Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the jnk family
A Ait-Hamlat, DJ Zea, A Labeeuw, L Polit, H Richard, E Laine
Journal of molecular biology 432 (7), 2121-2140, 2020
92020
Highlights of the 1st Argentine Symposium of Young Bioinformatics Researchers (1SAJIB) organized by the ISCB RSG-Argentina
RG Parra, LA Defelipe, AB Guzovsky, A Monzón, F Cravero, E Mancini, ...
PeerJ, 2016
62016
Coevolution analysis of amino-acids reveals diversified drug-resistance solutions in viral sequences: a case study of hepatitis B virus
E Teppa, F Nadalin, C Combet, DJ Zea, L David, A Carbone
Virus Evolution 6 (1), veaa006, 2020
52020
Intrinsically disordered protein ensembles shape evolutionary rates revealing conformational patterns
N Palopoli, J Marchetti, AM Monzon, DJ Zea, SCE Tosatto, MS Fornasari, ...
Journal of Molecular Biology 433 (3), 166751, 2021
42021
COVTree: Coevolution in OVerlapped sequences by Tree analysis server
E Teppa, DJ Zea, F Oteri, A Carbone
Nucleic Acids Research 48 (W1), W558-W565, 2020
32020
Exploring protein conformational diversity
AM Monzon, MS Fornasari, DJ Zea, G Parisi
Computational Methods in Protein Evolution, 353-365, 2019
32019
ASES: visualizing evolutionary conservation of alternative splicing in proteins
DJ Zea, H Richard, E Laine
Bioinformatics 38 (9), 2615-2616, 2022
22022
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