| Defining the core essential genome of Pseudomonas aeruginosa BE Poulsen, R Yang, AE Clatworthy, T White, SJ Osmulski, L Li, ... Proceedings of the National Academy of Sciences 116 (20), 10072-10080, 2019 | 167 | 2019 |
| Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination RP Bhattacharyya, N Bandyopadhyay, P Ma, SS Son, J Liu, LL He, L Wu, ... Nature medicine 25 (12), 1858-1864, 2019 | 97 | 2019 |
| Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis V Betin, C Penaranda, N Bandyopadhyay, R Yang, A Abitua, ... Scientific reports 9 (1), 19244, 2019 | 29 | 2019 |
| Epiphany: predicting Hi-C contact maps from 1D epigenomic signals R Yang, A Das, VR Gao, A Karbalayghareh, WS Noble, JA Bilmes, ... Genome Biology 24 (1), 1-26, 2023 | 18 | 2023 |
| Accelerating Batch Active Learning Using Continual Learning Techniques A Das, G Bhatt, M Bhalerao, V Gao, R Yang, J Bilmes arXiv preprint arXiv:2305.06408, 2023 | 6* | 2023 |
| Efficient detection and assembly of non-reference DNA sequences with synthetic long reads D Meleshko, R Yang, P Marks, S Williams, I Hajirasouliha Nucleic Acids Research 50 (18), e108-e108, 2022 | 4 | 2022 |
| ChromaFold predicts the 3D contact map from single-cell chromatin accessibility VR Gao, R Yang, A Das, R Luo, H Luo, DR McNally, I Karagiannidis, ... bioRxiv, 2023 | 1 | 2023 |
| HiC2Self: Self-supervised Hi-C contact map denoising R Yang, A Karbalayghareh, C Leslie The 2023 ICML Workshop on Computational Biology, 2023 | | 2023 |
