Jonathan A Atkinson
Jonathan A Atkinson
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Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping
MP Pound, JA Atkinson, AJ Townsend, MH Wilson, M Griffiths, ...
GigaScience, 2017
Uncovering the hidden half of plants using new advances in root phenotyping
JA Atkinson, MP Pound, MJ Bennett, DM Wells
Current opinion in biotechnology 55, 1-8, 2019
Branching out in roots: uncovering form, function, and regulation
JA Atkinson, A Rasmussen, R Traini, U Vo▀, C Sturrock, SJ Mooney, ...
Plant Physiology 166 (2), 538-550, 2014
RootNav: navigating images of complex root architectures
MP Pound, AP French, JA Atkinson, DM Wells, MJ Bennett, T Pridmore
Plant physiology 162 (4), 1802-1814, 2013
Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat
JA Atkinson, LU Wingen, M Griffiths, MP Pound, O Gaju, MJ Foulkes, ...
Journal of Experimental Botany 66 (8), 2283-2292, 2015
Deep learning for multi-task plant phenotyping
MP Pound, JA Atkinson, DM Wells, TP Pridmore, AP French
Proceedings of the IEEE International Conference on Computer Visioná…, 2017
Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots
S Passot, F Gnacko, D Moukouanga, M Lucas, S Guyomarc’h, BM Ortega, ...
Frontiers in plant science 7, 829, 2016
RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures
R Yasrab, JA Atkinson, DM Wells, AP French, TP Pridmore, MP Pound
GigaScience 8 (11), giz123, 2019
Soil strength influences wheat root interactions with soil macropores
JA Atkinson, MJ Hawkesford, WR Whalley, H Zhou, SJ Mooney
Plant, cell & environment 43 (1), 235-245, 2020
Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation
U Mohammed, RS Caine, JA Atkinson, EL Harrison, D Wells, CC Chater, ...
Scientific reports 9 (1), 1-13, 2019
High throughput procedure utilising chlorophyll fluorescence imaging to phenotype dynamic photosynthesis and photoprotection in leaves under controlled gaseous conditions
L McAusland, JA Atkinson, T Lawson, EH Murchie
Plant Methods 15 (1), 1-15, 2019
The interaction between wheat roots and soil pores in structured field soil
H Zhou, WR Whalley, MJ Hawkesford, RW Ashton, B Atkinson, ...
Journal of Experimental Botany, 2021
An updated protocol for high throughput plant tissue sectioning
JA Atkinson, DM Wells
Frontiers in plant science 8, 1721, 2017
Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies
JA Atkinson, G Lobet, M Noll, PE Meyer, M Griffiths, DM Wells
GigaScience 6 (10), gix084, 2017
Demystifying roots: A need for clarification and extended concepts in root phenotyping
G Lobet, A Paez-Garcia, H Schneider, A Junker, JA Atkinson, S Tracy
Plant Science 282, 11-13, 2019
Field phenotyping for the future
JA Atkinson, RJ Jackson, AR Bentley, E Ober, DM Wells
Annu. Plant Rev. Online 1, 1-18, 2018
Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency
K Kenobi, JA Atkinson, DM Wells, O Gaju, JG deSilva, MJ Foulkes, ...
Journal of Experimental Botany, 2017
The HK5 and HK6 cytokinin receptors mediate diverse developmental pathways in rice
CA Burr, J Sun, MV Yamburenko, A Willoughby, C Hodgens, SL Boeshore, ...
Development 147 (20), dev191734, 2020
Low-cost automated vectors and modular environmental sensors for plant phenotyping
SA Bagley, JA Atkinson, H Hunt, MH Wilson, TP Pridmore, DM Wells
Sensors 20 (11), 3319, 2020
Identification of QTL and underlying genes for root system architecture associated with nitrate nutrition in hexaploid wheat
M Griffiths, JA Atkinson, LJ Gardiner, R Swarup, MP Pound, MH Wilson, ...
Journal of Integrative Agriculture 21 (4), 917-932, 2022
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