Xiucai Ye
Xiucai Ye
Department of Computer Science,University of Tsukuba
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CPPred-FL: a sequence-based predictor for large-scale identification of cell-penetrating peptides by feature representation learning
X Qiang, C Zhou, X Ye, P Du, R Su, L Wei
Briefings in Bioinformatics 21 (1), 11-23, 2020
M6AMRFS: robust prediction of N6-methyladenosine sites with sequence-based features in multiple species
X Qiang, H Chen, X Ye, R Su, L Wei
Frontiers in genetics 9, 495, 2018
ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning
L Wei, X Ye, T Sakurai, Z Mu, L Wei
Bioinformatics 38 (6), 1514-1524, 2022
ATSE: a peptide toxicity predictor by exploiting structural and evolutionary information based on graph neural network and attention mechanism
L Wei, X Ye, Y Xue, T Sakurai, L Wei
Briefings in Bioinformatics 22 (5), bbab041, 2021
Robust similarity measure for spectral clustering based on shared neighbors
X Ye, T Sakurai
ETRI journal 38 (3), 540-550, 2016
Multi-objective optimization based virtual resource allocation strategy for cloud computing
L Xu, Z Zeng, X Ye
2012 IEEE/ACIS 11th International Conference on Computer and Information …, 2012
NerLTR-DTA: drug–target binding affinity prediction based on neighbor relationship and learning to rank
X Ru, X Ye, T Sakurai, Q Zou
Bioinformatics 38 (7), 1964-1971, 2022
An oversampling framework for imbalanced classification based on Laplacian eigenmaps
X Ye, H Li, A Imakura, T Sakurai
Neurocomputing 399, 107-116, 2020
Distributed Collaborative Feature Selection Based on Intermediate Representation.
X Ye, H Li, A Imakura, T Sakurai
IJCAI, 4142-4149, 2019
iLoc-miRNA: extracellular/intracellular miRNA prediction using deep BiLSTM with attention mechanism
ZY Zhang, L Ning, X Ye, YH Yang, Y Futamura, T Sakurai, H Lin
Briefings in Bioinformatics 23 (5), bbac395, 2022
Review and comparative analysis of machine learning-based phage virion protein identification methods
C Meng, J Zhang, X Ye, F Guo, Q Zou
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1868 (6), 140406, 2020
Exploration of the correlation between GPCRs and drugs based on a learning to rank algorithm
X Ru, L Wang, L Li, H Ding, X Ye, Q Zou
Computers in Biology and Medicine 119, 103660, 2020
Spectral clustering with adaptive similarity measure in Kernel space
X Ye, T Sakurai
Intelligent Data Analysis 22 (4), 751-765, 2018
m5U-SVM: identification of RNA 5-methyluridine modification sites based on multi-view features of physicochemical features and distributed representation
C Ao, X Ye, T Sakurai, Q Zou, L Yu
BMC biology 21 (1), 93, 2023
A spatial correlation based partial coverage scheduling scheme in wireless sensor networks
J Zhang, H Nian, X Ye, X Ji, Y He
Journal of Network Intelligence 5 (2), 34-43, 2020
Complex moment-based supervised eigenmap for dimensionality reduction
A Imakura, M Matsuda, X Ye, T Sakurai
Proceedings of the AAAI Conference on Artificial Intelligence 33 (01), 3910-3918, 2019
Deep generative model for drug design from protein target sequence
Y Chen, Z Wang, L Wang, J Wang, P Li, D Cao, X Zeng, X Ye, T Sakurai
Journal of Cheminformatics 15 (1), 38, 2023
Collaborative data analysis: Non-model sharing-type machine learning for distributed data
A Imakura, X Ye, T Sakurai
Knowledge Management and Acquisition for Intelligent Systems: 17th Pacific …, 2021
LT codes based distributed coding for efficient distributed storage in wireless sensor networks
X Ye, J Li, WT Chen, F Tang
2015 IFIP Networking Conference (IFIP Networking), 1-9, 2015
Spectral clustering using robust similarity measure based on closeness of shared nearest neighbors
X Ye, T Sakurai
2015 International joint conference on neural networks (IJCNN), 1-8, 2015
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