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Stephen Bond
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Year
The Nosé–Poincaré method for constant temperature molecular dynamics
SD Bond, BJ Leimkuhler, BB Laird
Journal of Computational Physics 151 (1), 114-134, 1999
4941999
Electrodiffusion: A continuum modeling framework for biomolecular systems with realistic spatiotemporal resolution
B Lu, YC Zhou, GA Huber, SD Bond, MJ Holst, JA McCammon
The Journal of chemical physics 127 (13), 2007
1042007
Finite element simulations of acetylcholine diffusion in neuromuscular junctions
K Tai, SD Bond, HR MacMillan, NA Baker, MJ Holst, JA McCammon
Biophysical journal 84 (4), 2234-2241, 2003
802003
Numerical integration of the extended variable generalized Langevin equation with a positive Prony representable memory kernel
AD Baczewski, SD Bond
The Journal of chemical physics 139 (4), 2013
752013
Molecular dynamics and the accuracy of numerically computed averages
SD Bond, BJ Leimkuhler
Acta Numerica 16 (1), 1-65, 2007
722007
Finite element analysis of the time-dependent Smoluchowski equation for acetylcholinesterase reaction rate calculations
Y Cheng, JK Suen, D Zhang, SD Bond, Y Zhang, Y Song, NA Baker, ...
Biophysical journal 92 (10), 3397-3406, 2007
492007
A first‐order system least‐squares finite element method for the Poisson‐Boltzmann equation
SD Bond, JH Chaudhry, EC Cyr, LN Olson
Journal of computational chemistry 31 (8), 1625-1635, 2010
462010
Continuum simulations of acetylcholine diffusion with reaction-determined boundaries in neuromuscular junction models
Y Cheng, JK Suen, Z Radić, SD Bond, MJ Holst, JA McCammon
Biophysical chemistry 127 (3), 129-139, 2007
442007
An odyssey into local refinement and multilevel preconditioning III: Implementation and numerical experiments
B Aksoylu, S Bond, M Holst
SIAM Journal on Scientific Computing 25 (2), 478-498, 2003
432003
Strong local-nonlocal coupling for integrated fracture modeling
DJ Littlewood, SA Silling, JA Mitchell, PD Seleson, SD Bond, ML Parks, ...
Sandia National Lab.(SNL-NM), Albuquerque, NM (United States); Sandia …, 2015
292015
Stabilized integration of Hamiltonian systems with hard-sphere inequality constraints
SD Bond, BJ Leimkuhler
SIAM Journal on Scientific Computing 30 (1), 134-147, 2008
242008
Time-transformations for reversible variable stepsize integration
SD Bond, BJ Leimkuhler
Numerical Algorithms 19, 55-71, 1998
231998
Finite element approximation to a finite-size modified Poisson-Boltzmann equation
JH Chaudhry, SD Bond, LN Olson
Journal of Scientific Computing 47 (3), 347-364, 2011
222011
A Galerkin radial basis function method for nonlocal diffusion
SD Bond, RB Lehoucq, ST Rowe
Meshfree Methods for Partial Differential Equations VII, 1-21, 2015
202015
On the approximation of Feynman–Kac path integrals
SD Bond, BB Laird, BJ Leimkuhler
Journal of Computational Physics 185 (2), 472-483, 2003
182003
Goal-Oriented Adaptivity and Multilevel Preconditioning for the Poisson-Boltzmann Equation
B Aksoylu, SD Bond, EC Cyr, M Holst
Journal of scientific computing 52 (1), 202-225, 2012
142012
Neural-network based collision operators for the Boltzmann equation
ST Miller, NV Roberts, SD Bond, EC Cyr
Journal of Computational Physics 470, 111541, 2022
102022
A weighted adaptive least-squares finite element method for the Poisson–Boltzmann equation
JH Chaudhry, SD Bond, LN Olson
Applied Mathematics and Computation 218 (9), 4892-4902, 2012
102012
On the estimation and correction of discretization error in molecular dynamics averages
N Arizumi, SD Bond
Applied Numerical Mathematics 62 (12), 1938-1953, 2012
82012
Generating initial data in general relativity using adaptive finite element methods
B Aksoylu, D Bernstein, S Bond, M Holst
Arxiv preprint arXiv:0801.3142, 2008
72008
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Articles 1–20