Richard Neher
Richard Neher
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Cited by
Cited by
Nextstrain: real-time tracking of pathogen evolution
J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ...
Bioinformatics 34 (23), 4121-4123, 2018
TreeTime: maximum likelihood phylodynamic analysis
P Sagulenko, V Puller, R Neher
Virus Evolution 4 (1), vex042, 2018
Nextclade: clade assignment, mutation calling and quality control for viral genomes
I Aksamentov, C Roemer, EB Hodcroft, RA Neher
Journal of Open Source Software 6 (67), 3773, 2021
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation.
M Salathé, CL Althaus, R Neher, S Stringhini, E Hodcroft, J Fellay, ...
Swiss medical weekly 150 (11-12), w20225-, 2020
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ...
Nature 595 (7869), 707-712, 2021
Novel SARS-CoV-2 variants: the pandemics within the pandemic
E Boehm, I Kronig, RA Neher, I Eckerle, P Vetter, L Kaiser
Clinical Microbiology and Infection 27 (8), 1109-1117, 2021
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
RA Neher, R Dyrdak, V Druelle, EB Hodcroft, J Albert
Swiss Medical Weekly 150 (1112), 2020
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States
JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ...
Cell 181 (5), 990-996. e5, 2020
2019-novel Coronavirus (2019-nCoV): estimating the case fatality rate–a word of caution
M Battegay, R Kuehl, S Tschudin-Sutter, HH Hirsch, AF Widmer, ...
Swiss Medical Weekly 150 (0506), 2020
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
panX: pan-genome analysis and exploration
W Ding, F Baumdicker, RA Neher
Nucleic Acids Research 46 (1), e5-e5, 2017
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
F Konings, MD Perkins, JH Kuhn, MJ Pallen, EJ Alm, BN Archer, ...
Nature Microbiology, 1-3, 2021
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2
CBF Vogels, MI Breban, IM Ott, T Alpert, ME Petrone, AE Watkins, ...
PLoS biology 19 (5), e3001236, 2021
Population genomics of intrapatient HIV-1 evolution
F Zanini, J Brodin, L Thebo, C Lanz, G Bratt, J Albert, RA Neher
eLife 4, e11282, 2016
Genealogies of rapidly adapting populations
RA Neher, O Hallatschek
Proceedings of the National Academy of Sciences 110 (2), 437-442, 2013
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus
C Happi, I Adetifa, P Mbala, R Njouom, E Nakoune, A Happi, N Ndodo, ...
PLoS biology 20 (8), e3001769, 2022
Recombination rate and selection strength in HIV intra-patient evolution
RA Neher, T Leitner
PLoS computational biology 6 (1), e1000660, 2010
A global surveillance system for crop diseases
M Carvajal-Yepes, K Cardwell, A Nelson, KA Garrett, B Giovani, ...
Science 364 (6447), 1237-1239, 2019
Predicting evolution from the shape of genealogical trees
RA Neher, CA Russell, BI Shraiman
eLife 3, e03568, 2014
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