| OSPREY 3.0: Open‐source protein redesign for you, with powerful new features MA Hallen, JW Martin, A Ojewole, JD Jou, AU Lowegard, MS Frenkel, ... Journal of computational chemistry 39 (30), 2494-2507, 2018 | 77 | 2018 |
| Early computational detection of potential high-risk SARS-CoV-2 variants K Beguir, MJ Skwark, Y Fu, T Pierrot, NL Carranza, A Laterre, I Kadri, ... Computers in biology and medicine 155, 106618, 2023 | 33 | 2023 |
| OSPREY predicts resistance mutations using positive and negative computational protein design A Ojewole, A Lowegard, P Gainza, SM Reeve, I Georgiev, AC Anderson, ... Computational Protein Design, 291-306, 2017 | 18 | 2017 |
| Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD: KRas protein-protein interface AU Lowegard, MS Frenkel, GT Holt, JD Jou, AA Ojewole, BR Donald PLoS Computational Biology 16 (6), e1007447, 2020 | 15 | 2020 |
| Computational analysis of energy landscapes reveals dynamic features that contribute to binding of inhibitors to CFTR-associated ligand GT Holt, JD Jou, NP Gill, AU Lowegard, JW Martin, DR Madden, ... The Journal of Physical Chemistry B 123 (49), 10441-10455, 2019 | 11 | 2019 |
| Minimization-Aware Recursive K*: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape JD Jou, GT Holt, AU Lowegard, BR Donald Journal of Computational Biology 27 (4), 550-564, 2020 | 10 | 2020 |
| Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design GT Holt, J Gorman, S Wang, AU Lowegard, B Zhang, T Liu, BC Lin, ... Cell reports 42 (7), 2023 | 6 | 2023 |
| Minimization-Aware Recursive (): A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy … JD Jou, GT Holt, AU Lowegard, BR Donald Research in Computational Molecular Biology: 23rd Annual International …, 2019 | 3 | 2019 |
| Novel Algorithms and Tools for Computational Protein Design with Applications to Drug Resistance Prediction, Antibody Design, Peptide Inhibitor Design, and Protein Stability … AU Lowegard Duke University, 2019 | 2 | 2019 |
| Compositions for inhibiting KRas signaling and methods of making and using same B Donald, A Lowegard, M Frenkel US Patent 12,024,725, 2024 | | 2024 |
| Supplementary Information: Minimization-Aware Recursive K (MARK): A Novel, Provable Algorithm that Accelerates Ensemble-based Protein Design and Provably Approximates the … JD Jou, GT Holt, AU Lowegard, BR Donald | | 2019 |
| Predicting the Effect of Mutations in the KRas/c-Raf-RBD Protein-Protein Interface A Lowegard, M Frenkel, B Donald Biophysical Journal 114 (3), 576a, 2018 | | 2018 |
| How we responded to reviewers’ comments: Novel, Provable Algorithms for Efficient Ensemble-Based Computational Protein Design and Their Application to the Redesign of the c-Raf … AU Lowegard, MS Frenkel, GT Holt, JD Jou, AA Ojewole, BR Donald | | |
