| High-throughput determination of the antigen specificities of T cell receptors in single cells SQ Zhang, KY Ma, AA Schonnesen, M Zhang, C He, E Sun, CM Williams, ... Nature biotechnology 36 (12), 1156-1159, 2018 | 164 | 2018 |
| General model for treating short-range electrostatic penetration in a molecular mechanics force field Q Wang, JA Rackers, C He, R Qi, C Narth, L Lagardere, N Gresh, ... Journal of chemical theory and computation 11 (6), 2609-2618, 2015 | 114 | 2015 |
| Direct measurement of T cell receptor affinity and sequence from naïve antiviral T cells SQ Zhang, P Parker, KY Ma, C He, Q Shi, Z Cui, CM Williams, BS Wendel, ... Science translational medicine 8 (341), 341ra77-341ra77, 2016 | 59 | 2016 |
| High-throughput and high-dimensional single-cell analysis of antigen-specific CD8+ T cells KY Ma, AA Schonnesen, C He, AY Xia, E Sun, E Chen, KR Sebastian, ... Nature immunology 22 (12), 1590-1598, 2021 | 49 | 2021 |
| Immune repertoire sequencing using molecular identifiers enables accurate clonality discovery and clone size quantification KY Ma, C He, BS Wendel, CM Williams, J Xiao, H Yang, N Jiang Frontiers in immunology 9, 33, 2018 | 49 | 2018 |
| Accurate immune repertoire sequencing reveals malaria infection driven antibody lineage diversification in young children BS Wendel, C He, M Qu, D Wu, SM Hernandez, KY Ma, EW Liu, J Xiao, ... Nature communications 8 (1), 531, 2017 | 47 | 2017 |
| The receptor repertoire and functional profile of follicular T cells in HIV-infected lymph nodes BS Wendel, D Del Alcazar, C He, PM Del Río-Estrada, B Aiamkitsumrit, ... Science immunology 3 (22), eaan8884, 2018 | 36 | 2018 |
| GMOL: an interactive tool for 3D genome structure visualization J Nowotny, A Wells, O Oluwadare, L Xu, R Cao, T Trieu, C He, J Cheng Scientific reports 6 (1), 1-8, 2016 | 34 | 2016 |
| MiRmat: mature microRNA sequence prediction C He, YX Li, G Zhang, Z Gu, R Yang, J Li, ZJ Lu, ZH Zhou, C Zhang, ... PLoS One 7 (12), e51673, 2012 | 28 | 2012 |
| The regulation of inherently autoreactive VH4-34–expressing B cells in individuals living in a malaria-endemic area of West Africa GT Hart, M Akkaya, AS Chida, C Wei, SA Jenks, C Tipton, C He, ... The Journal of Immunology 197 (10), 3841-3849, 2016 | 23 | 2016 |
| Mapping the Lineage Relationship between CXCR5+ and CXCR5− CD4+ T Cells in HIV-Infected Human Lymph Nodes D Del Alcazar, Y Wang, C He, BS Wendel, PM Del Río-Estrada, J Lin, ... Cell reports 28 (12), 3047-3060. e7, 2019 | 22 | 2019 |
| Bringing machine learning to research on intellectual and developmental disabilities: Taking inspiration from neurological diseases C Gupta, P Chandrashekar, T Jin, C He, S Khullar, Q Chang, D Wang Journal of Neurodevelopmental Disorders 14 (1), 28, 2022 | 18 | 2022 |
| Normalized Synergy Predicts That CD8 Co-Receptor Contribution to T Cell Receptor (TCR) and pMHC Binding Decreases As TCR Affinity Increases in Human Viral-Specific T Cells CM Williams, AA Schonnesen, SQ Zhang, KY Ma, C He, T Yamamoto, ... Frontiers in immunology 8, 894, 2017 | 18 | 2017 |
| A streamlined approach to antibody novel germline allele prediction and validation BS Wendel, C He, PD Crompton, SK Pierce, N Jiang Frontiers in immunology 8, 1072, 2017 | 11 | 2017 |
| BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids C He, NC Kalafut, SO Sandoval, R Risgaard, CL Sirois, C Yang, S Khullar, ... Cell Reports Methods, 2023 | 7 | 2023 |
| Rapid HIV progression is associated with extensive ongoing somatic hypermutation BS Wendel, Y Fu, C He, SM Hernandez, M Qu, Z Zhang, Y Jiang, X Han, ... The Journal of Immunology 205 (3), 587-594, 2020 | 7 | 2020 |
| Lineage tracking the generation of T regulatory cells from microbial activated T effector cells in naive mice K Zhu, C He, SQ Liu, M Qu, T Xie, X Yang, L Lei, X Zhou, L Shi, D Zhang, ... Frontiers in Immunology 10, 3109, 2020 | 6 | 2020 |
| DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype–phenotype prediction PB Chandrashekar, S Alatkar, J Wang, GE Hoffman, C He, T Jin, S Khullar, ... Genome Medicine 15 (1), 88, 2023 | 2 | 2023 |
| Transcriptome and TCR Repertoire Measurements of CXCR3+ T Follicular Helper Cells Within HIV-Infected Human Lymph Nodes C He, MJ Malone, BS Wendel, KY Ma, D Del Alcazar, DB Weiner, ... Frontiers in immunology 13, 2022 | 1 | 2022 |
| High-Throughput and High-Dimensional Single Cell Analysis of Antigen-Specific CD8+ T cells N Jiang, K Ma, AA Schonnesen, C He, A Xia, E Sun, E Chen, K Sebastian, ... The Journal of Immunology 206 (1_Supplement), 27.22-27.22, 2021 | | 2021 |
Ning (Jenny) JiangUniversity of PennsylvaniaVerified email at seas.upenn.edu
