| Patients with pancreatic adenocarcinoma exhibit elevated levels of myeloid-derived suppressor cells upon progression of disease J Markowitz, TR Brooks, MC Duggan, BK Paul, X Pan, L Wei, Z Abrams, ... Cancer Immunology, Immunotherapy 64, 149-159, 2015 | 131 | 2015 |
| A protocol to evaluate RNA sequencing normalization methods ZB Abrams, TS Johnson, K Huang, PRO Payne, K Coombes BMC bioinformatics 20, 1-7, 2019 | 103 | 2019 |
| Thresher: determining the number of clusters while removing outliers M Wang, ZB Abrams, SM Kornblau, KR Coombes BMC bioinformatics 19, 1-15, 2018 | 54 | 2018 |
| A proteomics approach identifies novel proteins involved in gravitropic signal transduction CA Schenck, V Nadella, SL Clay, J Lindner, Z Abrams, SE Wyatt American journal of botany 100 (1), 194-202, 2013 | 34 | 2013 |
| Electronic health record data quality assessment and tools: a systematic review AE Lewis, N Weiskopf, ZB Abrams, R Foraker, AM Lai, PRO Payne, ... Journal of the American Medical Informatics Association 30 (10), 1730-1740, 2023 | 33 | 2023 |
| Alterations in patient plasma microRNA expression profiles following resection of metastatic melanoma N Latchana, MJ DiVincenzo, K Regan, Z Abrams, X Zhang, NK Jacob, ... Journal of surgical oncology 118 (3), 501-509, 2018 | 32 | 2018 |
| Plasma microRNA levels following resection of metastatic melanoma N Latchana, ZB Abrams, J Harrison Howard, K Regan, N Jacob, P Fadda, ... Bioinformatics and biology insights 11, 1177932217694837, 2017 | 32 | 2017 |
| Time-to-progression after front-line fludarabine, cyclophosphamide, and rituximab chemoimmunotherapy for chronic lymphocytic leukaemia: a retrospective, multicohort study CD Herling, KR Coombes, A Benner, J Bloehdorn, LL Barron, ZB Abrams, ... The Lancet Oncology 20 (11), 1576-1586, 2019 | 23 | 2019 |
| Polychrome: Creating and assessing qualitative palettes with many colors KR Coombes, G Brock, ZB Abrams, LV Abruzzo bioRxiv, 303883, 2018 | 23 | 2018 |
| Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing TS Johnson, S Xiang, BR Helm, ZB Abrams, P Neidecker, R Machiraju, ... Scientific reports 10 (1), 18014, 2020 | 20 | 2020 |
| Unsupervised machine learning and prognostic factors of survival in chronic lymphocytic leukemia CE Coombes, ZB Abrams, S Li, LV Abruzzo, KR Coombes Journal of the American Medical Informatics Association 27 (7), 1019-1027, 2020 | 19 | 2020 |
| Simulation-derived best practices for clustering clinical data CE Coombes, X Liu, ZB Abrams, KR Coombes, G Brock Journal of biomedical informatics 118, 103788, 2021 | 15 | 2021 |
| Association between socioeconomic factors, race, and use of a specialty memory clinic A Lewis, A Gupta, I Oh, SE Schindler, N Ghoshal, Z Abrams, R Foraker, ... Neurology 101 (14), e1424-e1433, 2023 | 14 | 2023 |
| Integrative analysis of somatic mutations and transcriptomic data to functionally stratify breast cancer patients J Zhang, Z Abrams, JD Parvin, K Huang BMC genomics 17, 183-193, 2016 | 14 | 2016 |
| CytoGPS: a web-enabled karyotype analysis tool for cytogenetics ZB Abrams, L Zhang, LV Abruzzo, NA Heerema, S Li, T Dillon, ... Bioinformatics 35 (24), 5365-5366, 2019 | 13 | 2019 |
| Lack of human cytomegalovirus expression in single cells from glioblastoma tumors and cell lines TS Johnson, ZB Abrams, X Mo, Y Zhang, K Huang Journal of neurovirology 23, 671-678, 2017 | 13 | 2017 |
| Folate-conjugated immunoglobulin targets melanoma tumor cells for NK cell effector functions CC Skinner, EL McMichael, AC Jaime-Ramirez, ZB Abrams, RJ Lee, ... Melanoma research 26 (4), 329-337, 2016 | 13 | 2016 |
| Thirty biologically interpretable clusters of transcription factors distinguish cancer type ZB Abrams, M Zucker, M Wang, A Asiaee Taheri, LV Abruzzo, ... BMC genomics 19, 1-14, 2018 | 11 | 2018 |
| Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing MR Zucker, LV Abruzzo, CD Herling, LL Barron, MJ Keating, ZB Abrams, ... Bioinformatics 35 (17), 2924-2931, 2019 | 10 | 2019 |
| Self-explaining neural network with concept-based explanations for ICU mortality prediction S Kumar, SC Yu, T Kannampallil, Z Abrams, A Michelson, PRO Payne Proceedings of the 13th ACM International Conference on Bioinformatics …, 2022 | 9 | 2022 |
