| Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019 | 842 | 2019 |
| Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature communications 10 (1), 1014, 2019 | 346 | 2019 |
| Unravelling the collateral damage of antibiotics on gut bacteria L Maier, CV Goemans, J Wirbel, M Kuhn, C Eberl, M Pruteanu, P Müller, ... Nature 599 (7883), 120-124, 2021 | 192 | 2021 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 189 | 2022 |
| Biosynthetic potential of the global ocean microbiome L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ... Nature 607 (7917), 111-118, 2022 | 161 | 2022 |
| Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community S Blasche, Y Kim, RAT Mars, D Machado, M Maansson, E Kafkia, ... Nature Microbiology, 1-13, 2021 | 158 | 2021 |
| proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes DR Mende, I Letunic, OM Maistrenko, TSB Schmidt, A Milanese, L Paoli, ... Nucleic acids research 48 (D1), D621-D625, 2020 | 87 | 2020 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 51 | 2016 |
| Magnetosomes extracted from Magnetospirillum gryphiswaldense as theranostic agents in an experimental model of glioblastoma S Mannucci, S Tambalo, G Conti, L Ghin, A Milanese, A Carboncino, ... Contrast media & molecular imaging 2018, 2018 | 43 | 2018 |
| Calorie restriction improves metabolic state independently of gut microbiome composition: a randomized dietary intervention trial SA Sowah, A Milanese, R Schübel, J Wirbel, E Kartal, TS Johnson, ... Genome medicine 14 (1), 30, 2022 | 26 | 2022 |
| Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Keller, ... Microbiome 10 (1), 212, 2022 | 25 | 2022 |
| Changes in plasma short-chain fatty acid levels after dietary weight loss among overweight and obese adults over 50 weeks SA Sowah, F Hirche, A Milanese, TS Johnson, M Grafetstätter, R Schübel, ... Nutrients 12 (2), 452, 2020 | 25 | 2020 |
| Accurate de novo identification of biosynthetic gene clusters with GECCO LM Carroll, M Larralde, JS Fleck, R Ponnudurai, A Milanese, E Cappio, ... BioRxiv, 2021.05. 03.442509, 2021 | 24 | 2021 |
| Microbial abundance, activity and population genomic profiling with mOTUs2. Nat Commun 10: 1014 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... | 16 | 2019 |
| proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes A Fullam, I Letunic, TSB Schmidt, QR Ducarmon, N Karcher, S Khedkar, ... Nucleic acids research 51 (D1), D760-D766, 2023 | 15 | 2023 |
| mOTUs: profiling taxonomic composition, transcriptional activity and strain populations of microbial communities HJ Ruscheweyh, A Milanese, L Paoli, A Sintsova, DR Mende, G Zeller, ... Current Protocols 1 (8), e218, 2021 | 13 | 2021 |
| Dissecting the collateral damage of antibiotics on gut microbes L Maier, CV Goemans, M Pruteanu, J Wirbel, M Kuhn, E Cacace, ... BioRxiv, 2020.01. 09.893560, 2020 | 13 | 2020 |
| An investigation on genomic repeats G Franco, A Milanese Conference on Computability in Europe, 149-160, 2013 | 9 | 2013 |
| Systematic analysis of drug combinations against Gram-positive bacteria E Cacace, V Kim, V Varik, M Knopp, M Tietgen, A Brauer-Nikonow, ... Nature Microbiology 8 (11), 2196-2212, 2023 | 7 | 2023 |
| A genome analysis based on repeat sharing gene networks A Castellini, G Franco, A Milanese Natural computing 14, 403-420, 2015 | 7 | 2015 |
Georg ZellerEMBL, HeidelbergVerified email at embl.de
