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Matthew E. Monroe
Matthew E. Monroe
Verified email at pnnl.gov
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Cited by
Year
Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome
SM Varnum, DN Streblow, ME Monroe, P Smith, KJ Auberry, ...
Journal of virology 78 (20), 10960-10966, 2004
7582004
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
7042016
Reversed‐phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells
Y Wang, F Yang, MA Gritsenko, Y Wang, T Clauss, T Liu, Y Shen, ...
Proteomics 11 (10), 2019-2026, 2011
4842011
Human Plasma N-Glycoproteome Analysis by Immunoaffinity Subtraction, Hydrazide Chemistry, and Mass Spectrometry
T Liu, WJ Qian, MA Gritsenko, DG Camp, ME Monroe, RJ Moore, ...
Journal of proteome research 4 (6), 2070-2080, 2005
4712005
Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome
WJ Qian, T Liu, ME Monroe, EF Strittmatter, JM Jacobs, LJ Kangas, ...
Journal of proteome research 4 (1), 53-62, 2005
3772005
Advances in proteomics data analysis and display using an accurate mass and time tag approach
JSD Zimmer, ME Monroe, WJ Qian, RD Smith
Mass spectrometry reviews 25 (3), 450-482, 2006
3582006
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
3412019
Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets
JF Alfaro, CX Gong, ME Monroe, JT Aldrich, TRW Clauss, SO Purvine, ...
Proceedings of the National Academy of Sciences 109 (19), 7280-7285, 2012
2932012
Integrative analysis of the mitochondrial proteome in yeast
H Prokisch, C Scharfe, DG Camp, W Xiao, L David, C Andreoli, ...
PLoS biology 2 (6), e160, 2004
2452004
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
2412019
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ...
Nature protocols 13 (7), 1632-1661, 2018
2402018
VIPER: an advanced software package to support high-throughput LC-MS peptide identification
ME Monroe, N Tolić, N Jaitly, JL Shaw, JN Adkins, RD Smith
Bioinformatics 23 (15), 2021-2023, 2007
2262007
Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information
K Petritis, LJ Kangas, B Yan, ME Monroe, EF Strittmatter, WJ Qian, ...
Analytical chemistry 78 (14), 5026-5039, 2006
2072006
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
2052020
Quantitative Proteome Analysis of Human Plasma following in Vivo Lipopolysaccharide Administration Using 16O/18O Labeling and the Accurate Mass and Time Tag Approach* S
WJ Qian, ME Monroe, T Liu, JM Jacobs, GA Anderson, Y Shen, RJ Moore, ...
Molecular & Cellular Proteomics 4 (5), 700-709, 2005
1942005
Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry
JE Kyle, X Zhang, KK Weitz, ME Monroe, YM Ibrahim, RJ Moore, J Cha, ...
Analyst 141 (5), 1649-1659, 2016
1892016
Robust algorithm for alignment of liquid chromatography− mass spectrometry analyses in an accurate mass and time tag data analysis pipeline
N Jaitly, ME Monroe, VA Petyuk, TRW Clauss, JN Adkins, RD Smith
Analytical chemistry 78 (21), 7397-7409, 2006
1792006
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
1742020
High dynamic range characterization of the trauma patient plasma proteome
T Liu, WJ Qian, MA Gritsenko, W Xiao, LL Moldawer, A Kaushal, ...
Molecular & Cellular Proteomics 5 (10), 1899-1913, 2006
1682006
DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra
AM Mayampurath, N Jaitly, SO Purvine, ME Monroe, KJ Auberry, ...
Bioinformatics 24 (7), 1021-1023, 2008
1592008
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