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Matthew E. Monroe
Matthew E. Monroe
Verified email at pnnl.gov
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Year
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
9072016
Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome
SM Varnum, DN Streblow, ME Monroe, P Smith, KJ Auberry, ...
Journal of virology 78 (20), 10960-10966, 2004
8272004
Reversed‐phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells
Y Wang, F Yang, MA Gritsenko, Y Wang, T Clauss, T Liu, Y Shen, ...
Proteomics 11 (10), 2019-2026, 2011
5952011
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
5782019
Human Plasma N-Glycoproteome Analysis by Immunoaffinity Subtraction, Hydrazide Chemistry, and Mass Spectrometry
T Liu, WJ Qian, MA Gritsenko, DG Camp, ME Monroe, RJ Moore, ...
Journal of proteome research 4 (6), 2070-2080, 2005
4922005
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
4742020
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
4652019
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ...
Nature protocols 13 (7), 1632-1661, 2018
4022018
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer cell 39 (4), 509-528. e20, 2021
3972021
Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome
WJ Qian, T Liu, ME Monroe, EF Strittmatter, JM Jacobs, LJ Kangas, ...
Journal of proteome research 4 (1), 53-62, 2005
3852005
Advances in proteomics data analysis and display using an accurate mass and time tag approach
JSD Zimmer, ME Monroe, WJ Qian, RD Smith
Mass spectrometry reviews 25 (3), 450-482, 2006
3702006
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
3342020
Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets
JF Alfaro, CX Gong, ME Monroe, JT Aldrich, TRW Clauss, SO Purvine, ...
Proceedings of the National Academy of Sciences 109 (19), 7280-7285, 2012
3232012
Integrative analysis of the mitochondrial proteome in yeast
H Prokisch, C Scharfe, DG Camp, W Xiao, L David, C Andreoli, ...
PLoS Biology 2 (6), e160, 2004
2502004
Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry
JE Kyle, X Zhang, KK Weitz, ME Monroe, YM Ibrahim, RJ Moore, J Cha, ...
Analyst 141 (5), 1649-1659, 2016
2442016
VIPER: an advanced software package to support high-throughput LC-MS peptide identification
ME Monroe, N Tolić, N Jaitly, JL Shaw, JN Adkins, RD Smith
Bioinformatics 23 (15), 2021-2023, 2007
2302007
Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information
K Petritis, LJ Kangas, B Yan, ME Monroe, EF Strittmatter, WJ Qian, ...
Analytical chemistry 78 (14), 5026-5039, 2006
2142006
Integrated proteogenomic characterization across major histological types of pediatric brain cancer
F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ...
Cell 183 (7), 1962-1985. e31, 2020
2122020
MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape
VD Menachery, A Schäfer, KE Burnum-Johnson, HD Mitchell, AJ Eisfeld, ...
Proceedings of the National Academy of Sciences 115 (5), E1012-E1021, 2018
2022018
Quantitative Proteome Analysis of Human Plasma following in Vivo Lipopolysaccharide Administration Using 16O/18O Labeling and the Accurate Mass and Time Tag Approach* S
WJ Qian, ME Monroe, T Liu, JM Jacobs, GA Anderson, Y Shen, RJ Moore, ...
Molecular & Cellular Proteomics 4 (5), 700-709, 2005
1972005
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