John E. Stone

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Klaus SchultenProfessor of Physics, University of Illinois at Urbana-ChampaignVerified email at ks.uiuc.edu
James C PhillipsSenior Research Programmer, National Center for Supercomputing Applications, University of IllinoisVerified email at illinois.edu
David J. HardyResearch Programmer, University of Illinois at Urbana-ChampaignVerified email at illinois.edu
Zaida (Zan) Luthey-SchultenUniversity of Illinois at Urbana-ChampaignVerified email at illinois.edu
Emad Tajkhorshid, PhDProfessor of Biochemistry and Biophysics, University of IllinoisVerified email at illinois.edu
João Vieira RibeiroModerna TherapeuticsVerified email at modernatx.com
Wen-mei W. HwuSenior Distinguished Research Scientist, NVIDIA; Professor and Sanders-AMD Chair of Electrical andVerified email at illinois.edu
Rafael C BernardiAssociate Professor - Department of Physics at Auburn UniversityVerified email at auburn.edu
Kirby VandivortUniversity of Illinois at Urbana-ChampaignVerified email at uiuc.edu
Ryan McGreevyBeckman Institute, University of Illinois at Urbana-ChampaignVerified email at ks.uiuc.edu
Laxmikant KaleProfessor or Computer Science, University of IllinoisVerified email at illinois.edu
Barry IsralewitzPost-Doctoral Research Associate, Theoretical and Computational Biophysics Group, University ofVerified email at ks.uiuc.edu
Lydia FreddolinoAssociate ProfessorVerified email at umich.edu
Elijah RobertsJohns Hopkins UniversityVerified email at jhu.edu
Axel KohlmeyerFull Research Professor, Chemistry Department, College of Science and Technology, Temple UniversityVerified email at temple.edu
David LuebkeVice President of Research, NVIDIA CorporationVerified email at nvidia.com
Simon GreenNVIDIA, Oculus, Facebook, Meta Reality LabsVerified email at oculus.com
John OwensDepartment of Electrical and Computer Engineering, UC DavisVerified email at ece.ucdavis.edu
Volodymyr KindratenkoUniversity of Illinois at Urbana-ChampaignVerified email at illinois.edu
Till RudackRuhr University BochumVerified email at rub.de

John E. Stone

Distinguished Engineer, Scientific Visualization DevTech, NVIDIA Corporation

Verified email at nvidia.com - Homepage

Visualization GPU computing parallel computing ray tracing haptics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
GPU computing JD Owens, M Houston, D Luebke, S Green, JE Stone, JC Phillips Proceedings of the IEEE 96 (5), 879-899, 2008	3002	2008
OpenCL: A parallel programming standard for heterogeneous computing systems JE Stone, D Gohara, G Shi Computing in science & engineering 12 (3), 66-73, 2010	2362	2010
Scalable molecular dynamics on CPU and GPU architectures with NAMD JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ... The Journal of Chemical Physics 153 (4), 044130, 2020	2276	2020
Accelerating molecular modeling applications with graphics processors JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten Journal of Computational Chemistry 28 (16), 2618-2640, 2007	933	2007
GPU-accelerated molecular modeling coming of age JE Stone, DJ Hardy, IS Ufimtsev, K Schulten Journal of Molecular Graphics and Modelling 29 (2), 116-125, 2010	526	2010
An Efficient Library for Parallel Ray Tracing and Animation JE Stone University of Missouri-Rolla, 1998	513	1998
GPU clusters for high-performance computing VV Kindratenko, JJ Enos, G Shi, MT Showerman, GW Arnold, JE Stone, ... 2009 IEEE International Conference on Cluster Computing and Workshops, 1-8, 2009	331	2009
Fast Analysis of Molecular Dynamics Trajectories with Graphics Processing Units--Radial Distribution Function Histogramming BG Levine, JE Stone, A Kohlmeyer Journal of Computational Physics 230 (9), 3556-3569, 2011	307	2011
An asymmetric distributed shared memory model for heterogeneous parallel systems I Gelado, JE Stone, J Cabezas, S Patel, N Navarro, WW Hwu ACM SIGARCH Computer Architecture News 38 (1), 347-358, 2010	269	2010
A system for interactive molecular dynamics simulation JE Stone, J Gullingsrud, K Schulten Proceedings of the 2001 symposium on Interactive 3D graphics, 191-194, 2001	255	2001
Adapting a message-driven parallel application to GPU-accelerated clusters JC Phillips, JE Stone, K Schulten SC'08: Proceedings of the 2008 ACM/IEEE Conference on Supercomputing, 1-9, 2008	249	2008
NAMD goes quantum: an integrative suite for hybrid simulations MCR Melo, RC Bernardi, T Rudack, M Scheurer, C Riplinger, JC Phillips, ... Nature methods 15 (5), 351-354, 2018	215	2018
Using VMD: an introductory tutorial J Hsin, A Arkhipov, Y Yin, JE Stone, K Schulten Current protocols in bioinformatics 24 (1), 5.7. 1-5.7. 48, 2008	207	2008
QwikMD—integrative molecular dynamics toolkit for novices and experts JV Ribeiro, RC Bernardi, T Rudack, JE Stone, JC Phillips, PL Freddolino, ... Scientific reports 6 (1), 26536, 2016	205	2016
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics L Casalino, AC Dommer, Z Gaieb, EP Barros, T Sztain, SH Ahn, A Trifan, ... The International Journal of High Performance Computing Applications 35 (5 …, 2021	171	2021
Multilevel summation of electrostatic potentials using graphics processing units DJ Hardy, JE Stone, K Schulten Parallel Computing 35 (3), 164-177, 2009	171	2009
GPU acceleration of cutoff pair potentials for molecular modeling applications CI Rodrigues, DJ Hardy, JE Stone, K Schulten, WMW Hwu Proceedings of the 5th conference on Computing frontiers, 273-282, 2008	163	2008
Molecular dynamics-based refinement and validation for sub-5 Å cryo-electron microscopy maps A Singharoy, I Teo, R McGreevy, JE Stone, J Zhao, K Schulten eLife 5, e16105, 2016	159	2016
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism A Singharoy, C Maffeo, KH Delgado-Magnero, DJK Swainsbury, M Sener, ... Cell 179 (5), 1098-1111. e23, 2019	158	2019
Lattice microbes: High‐performance stochastic simulation method for the reaction‐diffusion master equation E Roberts, JE Stone, Z Luthey‐Schulten Journal of Computational Chemistry 34 (3), 245-255, 2013	146	2013

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