SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler R Luo, B Liu, Y Xie, Z Li, W Huang, J Yuan, G He, Y Chen, Q Pan, Y Liu, ... Gigascience 1 (1), 2047-217X-1-18, 2012 | 5014 | 2012 |
The oyster genome reveals stress adaptation and complexity of shell formation G Zhang, X Fang, X Guo, LI Li, R Luo, F Xu, P Yang, L Zhang, X Wang, ... Nature 490 (7418), 49-54, 2012 | 2174 | 2012 |
The genome of the mesopolyploid crop species Brassica rapa Brassica rapa Genome Sequencing Project Consortium, X Wang, H Wang, ... Nature genetics 43 (10), 1035-1039, 2011 | 2100 | 2011 |
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014 | 1904 | 2014 |
The sequence and de novo assembly of the giant panda genome R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ... Nature 463 (7279), 311-317, 2010 | 1375 | 2010 |
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 794 | 2013 |
Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 633 | 2011 |
Estimation of genomic characteristics by analyzing k-mer frequency in de novo genome projects B Liu, Y Shi, J Yuan, X Hu, H Zhang, N Li, Z Li, Y Chen, D Mu, W Fan arXiv preprint arXiv:1308.2012, 2013 | 445 | 2013 |
Comparison of the two major classes of assembly algorithms: overlap–layout–consensus and de-bruijn-graph Z Li, Y Chen, D Mu, J Yuan, Y Shi, H Zhang, J Gan, N Li, X Hu, B Liu, ... Briefings in functional genomics 11 (1), 25-37, 2012 | 411 | 2012 |
Insights into salt tolerance from the genome of Thellungiella salsuginea HJ Wu, Z Zhang, JY Wang, DH Oh, M Dassanayake, B Liu, Q Huang, ... Proceedings of the National Academy of Sciences 109 (30), 12219-12224, 2012 | 307 | 2012 |
MOCAT: a metagenomics assembly and gene prediction toolkit JR Kultima, S Sunagawa, J Li, W Chen, H Chen, DR Mende, ... Public Library of Science 7 (10), e47656, 2012 | 221 | 2012 |
pIRS: Profile-based Illumina pair-end reads simulator X Hu, J Yuan, Y Shi, J Lu, B Liu, Z Li, Y Chen, D Mu, H Zhang, N Li, Z Yue, ... Bioinformatics 28 (11), 1533-1535, 2012 | 214 | 2012 |
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution J Chen, Q Huang, D Gao, J Wang, Y Lang, T Liu, B Li, Z Bai, ... Nature Communications 4 (1), 1595, 2013 | 200 | 2013 |
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly B Liu, J Yuan, SM Yiu, Z Li, Y Xie, Y Chen, Y Shi, H Zhang, Y Li, TW Lam, ... Bioinformatics 28 (22), 2870-2874, 2012 | 188 | 2012 |
De novo assembly of a haplotype-resolved human genome H Cao, H Wu, R Luo, S Huang, Y Sun, X Tong, Y Xie, B Liu, H Yang, ... Nature biotechnology 33 (6), 617-622, 2015 | 81 | 2015 |
Acetylcholine inhibits hypoxia‐induced tumor necrosis factor‐α production via regulation of MAPKs phosphorylation in cardiomyocytes DL Li, JJ Liu, BH Liu, H Hu, L Sun, Y Miao, HF Xu, XJ Yu, X Ma, J Ren, ... Journal of cellular physiology 226 (4), 1052-1059, 2011 | 53 | 2011 |
Alterations of muscarinic acetylcholine receptors‐2, 4 and α7‐nicotinic acetylcholine receptor expression after ischaemia/reperfusion in the rat isolated heart DL Li, BH Liu, L Sun, M Zhao, X He, XJ Yu, WJ Zang Clinical and Experimental Pharmacology and Physiology 37 (12), 1114-1119, 2010 | 31 | 2010 |
Exercise benefits cardiovascular health in hyperlipidemia rats correlating with changes of the cardiac vagus nerve YH Wang, H Hu, SP Wang, ZJ Tian, QJ Zhang, QX Li, YY Li, XJ Yu, L Sun, ... European journal of applied physiology 108, 459-468, 2010 | 31 | 2010 |
XY-Meta: a high-efficiency search engine for large-scale metabolome annotation with accurate FDR estimation D Li, B Liu, H Zheng, X Xiao, Z Li, E Luan, W Li, Y Yang, Y Wang, Q Long, ... Analytical chemistry 92 (8), 5701-5707, 2020 | 19 | 2020 |
BASE: a practical de novo assembler for large genomes using long NGS reads B Liu, CM Liu, D Li, Y Li, HF Ting, SM Yiu, R Luo, TW Lam BMC genomics 17, 561-569, 2016 | 14 | 2016 |