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Saber Akhondi
Saber Akhondi
Scientific Researcher, senior director data Science Elsevies
Verified email at erasmusmc.nl - Homepage
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Cited by
Cited by
Year
The CHEMDNER corpus of chemicals and drugs and its annotation principles
M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ...
Journal of cheminformatics 7, 1-17, 2015
3462015
Overview of the BioCreative VI chemical-protein interaction Track
K Martin, R Obdulia, AA Saber, M Pérez, S Jesús, R Gael Pérez, ...
BioCreative VI Workshop 5, 140-147, 2017
261*2017
A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC
JA Kors, S Clematide, SA Akhondi, EM Van Mulligen, ...
Journal of the American Medical Informatics Association 22 (5), 948-956, 2015
832015
Annotated chemical patent corpus: a gold standard for text mining
SA Akhondi, AG Klenner, C Tyrchan, AK Manchala, K Boppana, D Lowe, ...
PloS one 9 (9), e107477, 2014
672014
Automatic identification of relevant chemical compounds from patents. The training corpus.
SA Akhondi, H Rey, M Schwörer, M Maier, J Tommey, H Nau, G Ilchmann, ...
Mendeley data, 2019
56*2019
Automatic identification of relevant chemical compounds from patents
SA Akhondi, H Rey, M Schwörer, M Maier, J Toomey, H Nau, G Ilchmann, ...
Database 2019, 2019
562019
Consistency of systematic chemical identifiers within and between small-molecule databases
SA Akhondi, JA Kors, S Muresan
Journal of cheminformatics 4, 1-7, 2012
502012
Improving chemical named entity recognition in patents with contextualized word embeddings
Z Zhai, DQ Nguyen, SA Akhondi, C Thorne, C Druckenbrodt, T Cohn, ...
arXiv preprint arXiv:1907.02679, 2019
492019
Recognition of chemical entities: combining dictionary-based and grammar-based approaches
SA Akhondi, KM Hettne, E Van Der Horst, EM Van Mulligen, JA Kors
Journal of cheminformatics 7, 1-11, 2015
472015
Erasmus MC at CLEF eHealth 2016: Concept recognition and coding in French texts
EM Van Mulligen, Z Afzal, S Akhondi, D Vo, J Kors
412016
Extraction of chemical-induced diseases using prior knowledge and textual information
E Pons, BFH Becker, SA Akhondi, Z Afzal, EM Van Mulligen, JA Kors
Database 2016, baw046, 2016
392016
ChEMU: named entity recognition and event extraction of chemical reactions from patents
DQ Nguyen, Z Zhai, H Yoshikawa, B Fang, C Druckenbrodt, C Thorne, ...
Advances in Information Retrieval: 42nd European Conference on IR Research …, 2020
382020
Overview of ChEMU 2020: named entity recognition and event extraction of chemical reactions from patents
J He, DQ Nguyen, SA Akhondi, C Druckenbrodt, C Thorne, R Hoessel, ...
Experimental IR Meets Multilinguality, Multimodality, and Interaction: 11th …, 2020
342020
Chemu 2020: Natural language processing methods are effective for information extraction from chemical patents
J He, DQ Nguyen, SA Akhondi, C Druckenbrodt, C Thorne, R Hoessel, ...
Frontiers in Research Metrics and Analytics 6, 654438, 2021
302021
ChEMU-Ref: a corpus for modeling anaphora resolution in the chemical domain
B Fang, C Druckenbrodt, SA Akhondi, J He, T Baldwin, K Verspoor
Proceedings of the 16th Conference of the European Chapter of the …, 2021
242021
Chemical entity recognition in patents by combining dictionary-based and statistical approaches
SA Akhondi, E Pons, Z Afzal, H van Haagen, BFH Becker, KM Hettne, ...
Database 2016, baw061, 2016
242016
RELigator: Chemical-disease relation extraction using prior knowledge and textual information
E Pons, B Becker, SA Akhondi, Z Afzal, EM van Mulligen, JA Kors
Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, 247-253, 2015
192015
Biomedical Concept Recognition in French Text Using Automatic Translation of English Terms.
Z Afzal, SA Akhondi, H van Haagen, EM van Mulligen, JA Kors
CLEF (Working Notes), 2015
162015
Detecting chemical reactions in patents
H Yoshikawa, DQ Nguyen, Z Zhai, C Druckenbrodt, C Thorne, ...
Proceedings of the The 17th Annual Workshop of the Australasian Language …, 2019
152019
Ambiguity of non-systematic chemical identifiers within and between small-molecule databases
SA Akhondi, S Muresan, AJ Williams, JA Kors
Journal of cheminformatics 7, 1-10, 2015
132015
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