| Critical size dependence of domain formation observed in coarse-grained simulations of bilayers composed of ternary lipid mixtures GA Pantelopulos, T Nagai, A Bandara, A Panahi, JE Straub The Journal of Chemical Physics 147 (9), 2017 | 63 | 2017 |
| Probing site-specific structural information of peptides at model membrane interface in situ B Ding, A Panahi, JJ Ho, JE Laaser, CL Brooks III, MT Zanni, Z Chen Journal of the American Chemical Society 137 (32), 10190-10198, 2015 | 60 | 2015 |
| Membrane Environment Modulates the pKa Values of Transmembrane Helices A Panahi, CL Brooks III The Journal of Physical Chemistry B 119 (13), 4601-4607, 2015 | 59 | 2015 |
| Dynamic heterogeneous dielectric generalized born (DHDGB): an implicit membrane model with a dynamically varying bilayer thickness A Panahi, M Feig Journal of chemical theory and computation 9 (3), 1709-1719, 2013 | 47 | 2013 |
| Specific binding of cholesterol to C99 domain of amyloid precursor protein depends critically on charge state of protein A Panahi, A Bandara, GA Pantelopulos, L Dominguez, JE Straub The journal of physical chemistry letters 7 (18), 3535-3541, 2016 | 41 | 2016 |
| Transferring the primo coarse-grained force field to the membrane environment: simulations of membrane proteins and helix–helix association P Kar, SM Gopal, YM Cheng, A Panahi, M Feig Journal of Chemical Theory and Computation 10 (8), 3459-3472, 2014 | 33 | 2014 |
| Conformational sampling of influenza fusion peptide in membrane bilayers as a function of termini and protonation states A Panahi, M Feig Biophysical Journal 98 (3), 671a, 2010 | 33 | 2010 |
| Exploring the structure and stability of cholesterol dimer formation in multicomponent lipid bilayers A Bandara, A Panahi, GA Pantelopulos, JE Straub Journal of computational chemistry 38 (16), 1479-1488, 2017 | 32 | 2017 |
| M2 amphipathic helices facilitate pH-dependent conformational transition in influenza A virus H Torabifard, A Panahi, CL Brooks III Proceedings of the National Academy of Sciences 117 (7), 3583-3591, 2020 | 27 | 2020 |
| Exploring the impact of proteins on the line tension of a phase-separating ternary lipid mixture A Bandara, A Panahi, GA Pantelopulos, T Nagai, JE Straub The Journal of chemical physics 150 (20), 2019 | 18 | 2019 |
| Effect of flanking residues on the conformational sampling of the internal fusion peptide from Ebola virus AJ Jaskierny, A Panahi, M Feig Proteins: Structure, Function, and Bioinformatics 79 (4), 1109-1117, 2011 | 16 | 2011 |
| Impact of cholesterol concentration and lipid phase on structure and fluctuation of amyloid precursor protein GA Pantelopulos, A Panahi, JE Straub The Journal of Physical Chemistry B 124 (45), 10173-10185, 2020 | 12 | 2020 |
| Hamiltonian mapping revisited: Calibrating minimalist models to capture molecular recognition by intrinsically disordered proteins SM Law, LS Ahlstrom, A Panahi, CL Brooks III The journal of physical chemistry letters 5 (19), 3441-3444, 2014 | 12 | 2014 |
| Molecular insights into human hereditary apolipoprotein AI amyloidosis caused by the Glu34Lys mutation I Morgado, A Panahi, AG Burwash, M Das, JE Straub, O Gursky Biochemistry 57 (39), 5738-5747, 2018 | 11 | 2018 |
| Molecular Dynamic Simulations of Membrane Transition in Cyclic Hexa-Peptides using All-Atom and Coarse-Grained Models D Rodea, MS Ardejani, A Panahi Biophysical Journal 120 (3), 230a-231a, 2021 | | 2021 |
| Conformational Sampling of pH-low Insertion Peptides in Multicomponent Bilyayers: Effects of Charged Lipids and Protonation States BM Bogart, A Panahi Biophysical Journal 118 (3), 211a, 2020 | | 2020 |
| Molecular dynamics study of pH low insertion peptides in multi-component lipid bilayers B Bogart, T Elsen, A Panahi ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258, 2019 | | 2019 |
| Ph-Mediated Processes in the Integral Membrane Influenza a Proton Channel (AM2) Studied by Constant Ph Molecular Dynamics H Torabifard, A Panahi, CL Brooks III PROTEIN SCIENCE 27, 134-134, 2018 | | 2018 |
| Molecular basis for a novel systemic form of human hereditary apoA-I amyloidosis with vision loss I Morgado, PR Rothschild, A Panahi, JC Aldigier, AG Burwash, M Das, ... bioRxiv, 354001, 2018 | | 2018 |
| Modeling of the pH-dependent process in the integral membrane influenza A proton channel (AM2) using constant pH molecular dynamics simulations H Torabifard, A Panahi, C Brooks ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 255, 2018 | | 2018 |
